The MS Community provides support to biological and clinical research projects carried at the Campus. It comprises MS-Facilities and MS-research groups from the MPI CBG, UKD, CMCB (TUD), CRTD and NCT, and Lipotype GmbH. The sites host more than 20 high-end MS instruments and have expertise in MS-based Lipidomics, Proteomics and Metabolomics. We work on service base and open for research collaborations. To our activities belong regular meetings, organization of ms-events, MS journal club and scientific consulting.
Speaker: Prof. Kai Simons
Topic: What Have Lipids to Do With the Worst Pandemic Ever?
Date and time: 29.06.2022 17:00
More info and Registration: www.lipotype.com/lipidomics-webinars/lipids-and-the-obesity-pandemic/
Host: Yuting Wang (former Shevchenko) and Maren Rudolph (Zeissig Group, TU Hospital/CRTD)
Topic: Clinical Lipidomics. Sortase A-cleavable CD1d identifies sphingomyelins as major class of CD1d-associated lipids.
Paper: https://www.frontiersin.org/articles/10.3389/fimmu.2022.897873/abstract
Date and time: 28.06.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Ignacy Rzagalinski
Topic: Global Extraction from Parallel Reaction Monitoring to Quantify Background Peptides for Improved Normalization and Quality Control in Targeted Proteomics
Paper: https://pubs.acs.org/doi/10.1021/acs.analchem.1c01375?ref=pdf
Date and time: 14.06.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Marc Gentzel (MS Facility, TU Dresren)
Speaker: Dr. Weißker/Dr.Roudini, Leibniz Institute for Solid State and Materials Research Dresden (IFW)
Topic: Nanotechnology and Aerosol Generation
Paper: https://pubs.rsc.org/en/content/articlelanding/2015/lc/c5lc00756a/unauth
Date and time: 18.05.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Speaker: Andrej Shevchenko
Topic: Direct analysis of tissue biopsies could be in a better position to elucidate pathophysiological mechanisms than liquid biopsies.
Date and time: 17.05.2022 17:00
More info and Registration: https://www.lipotype.com/lipidomics-webinars/shotgun-lipidomics-of-tissue-biopsies
Video: youtu.be/reVBBEKdDIM
Speaker: Christian Klose
Topic: Yeast is a powerful model system for cell and molecular biology research. What should be considered when conducting yeast lipidomics?
Date and time: 05.04.2022 17:00
More info and Registration: www.lipotype.com/how-to-yeast-lipidomics-research
Host: Maria Fedorova Lab
Topic: Achieving Absolute Molar Lipid Concentrations: A Phospholipidomics Cross-Validation Study
Paper: https://pubs.acs.org/doi/10.1021/acs.analchem.1c03743
Date and time: 22.03.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Silvia Radrezza
Topic: Handheld Mass Spectrometer with Intelligent Adaptability for On-Site and Point-of-Care Analysis
Paper: https://doi.org/10.1021/acs.analchem.1c02508
Date and time: 15.03.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Speaker: Mathias Gerl
Topic: The amount and complexity of lipidomics data sets can be intimidating initially - but this does not need to be the case.
Date and time: 24.02.2022 17:00
More info and Registration: www.lipotype.com/lipidomics-webinars/how-to-make-sense-of-lipidomics-data
Host: Jonas Pohls (Agnes Toth-Petroczy/Shevchenko labs) and MS Community
Topic: Interplay between transcriptomics and proteomics
Paper: https://doi.org/10.1016/j.molcel.2020.03.031
Date and time: 22.02.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Tobias Jumel
Topic: Does Data-Independent acquisition Data Contain Hidden Gems? A Case Study Related to Alzheimer's Disease
Paper: pubs.acs.org/doi/10.1021/acs.jproteome.1c00558
Date and time: 08.02.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Kai Schuhmann
Topic: Nontargeted High-Resolution Mass Spectrometric Workflow for the Detection of Butyrylcholinesterase-Derived Adducts with Organophosphorus Toxicants and Structural Characterization of Their Phosphyl Moity after In-Source Fragmentation
Paper: pubs.acs.org/doi/abs/10.1021/acs.analchem.1c04116
Date and time: 25.01.2022, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Date and time: 09-13.05.2022
Application deadline: 25.03.2022
More information: https://www.digs-bb.de/summer-schools/2022/lipid-metabolism
Molecular Analysis / MS facility at CMCB
Experimental MS unit at University Clinic Carl Gustav Carus
Mass Cytometry Facility (CYTOF) Facility at the CRTD
MS Unit at the Faculty of Psychology
Lipid metabolism Research group
MS4U was launched in 2020 to build a bridge between MS Community and scientists working in biological and clinical research at Dresdner campus. Here we discuss articles selected by YOU.
You found a hot paper related to your scientific topic but...
- do not understand ms-method?
- unsure if it fosters YOUR project?
- unclear if this is routine or only runs in a single lab?
- and, how it practically works?
Once you suggest an article or topic, we will look for complementary articles published by leading practitioners in this field and then analyze them together with you. MS-Lipidomics, MS-proteomics, MS-metabolomics, MS-imaging, any MS - let's discuss it with MS-Profis from the entire Dresden campus!
Submit YOUR HOT PAPER suggestion by clinical.lipidomics@mpi-cbg.de
2021 Events
Host: Andrej Shevchenko
Date and time: 07.12.2021 14:00-17:00
Location: https://zoom.us/j/99494697998?pwd=Q0xBZzBNdHdYSk1PRmdjMXltS2dkQT09 and MPI-CBG
14:00 -14:05 | Dr. Andrej Shevchenko | Welcome and Introduction | Host |
14:05 -14:15 | Dr. Ignacy Rzagalinski | Consistent and sensitive absolute quantification of proteins in liquid biopsies by FastCAT workflow | Shevchenko Lab |
14:15 - 14:25 | Dr. Sofia Traikov | Blood porphyrins are prognostic markers of developing COVID-19 | Metabolomics Unit, MPI CBG, Dresden |
14:25 - 14:35 | Dr. Christian Klose | Lipotype Shotgun Lipidomics - Highlights in 2021 | CTO, Lipotype GmbH, Dresden |
14:35- 14:45 | Dr. Yury Tsybin | On the Value of the Unreduced Data for Orbitrap-Driven Omics | Spectroswiss Sarl, Lausanne, Switzerland |
14:45 - 14:55 | Dr. Robert Ahrends | Multiomics of synaptic junctions reveals altered lipid metabolism and signaling following environmental enrichment | Ahrends Lab, Fakultät für Chemie, University of Vienna, Austria |
14:55 - 15:05 | break | chatroom will be open for discussion and questions |
|
15:05 - 15:15 | Dr. Kai Schuhmann | Molecular composition and dynamics of the lipidome by ultra-high resolution shotgun mass spectrometry | Shevchenko Lab |
15:15 - 15:25 | Dr. Andre Nadler | Analysing lipid metabolism and transport on sub-cellular scales | Nadler Lab, MPI CBG, Dresden |
15:25 - 15:35 | Dr. Dale Cooper-Shepherd | What's happening with Cyclic Ion Mobility-Mass Spectrometry? | Senior Scientist, Waters Inc., Wilmslow, UK |
15:35 -15:45 | Dr. Maria Fedorova | Digging into the epilipidome: dysregulation of lipid modifications in human obesity and type II diabetes | Fedorova Lab, Centre for Membrane Biochemistry and Lipid Research, TU Dresden |
15:45 -15:55 | Dr. Olga Vvedenskaya | Off bench experience: how to get there and what to expect? | Spectroswiss, Lausanne, Switzerland |
15:55- 16:05 | break | chatroom will be open for discussion and questions |
|
16:05 -16:15 | Dr. Bharath Kumar Raghuraman | New approaches in quantitative analysis of proteins | Evosep, Odense, Denmark |
16:15 - 16:25 | Dr. Eduardo Jacobo Miranda Ackerman | Engineering the New Generation of LipidXplorer | Shevchenko Lab |
16:25 - 16:35 | Dr. Pia Hoenscheid/Linna Sommer | MALDI Imaging in the pathology - gastric carcinoma as a new target for diagnostic stratification by mass spec patterns | MALDI Imaging Unit, National Centre for Tumor Diseases, Dresden |
16:35 - 16:45 | Tim Daniel Rose, PhD researcher | Revealing mechanisms of lipidomic dysregulation with the Lipid Network Explorer | Pauling Lab, LipiTUM, Experimental Bioinformatics, TU Munich, Germany |
16:45 -16:55 | Dr. Gerhard Liebisch, Dr. Marcus Höring | Highlights of Lipidomics Regensburg in 2021 | Liebisch Lab, Clinical Chemistry and Laboratory Medicine, University Regensburg, Germany |
16:55 -17:00 | Dr. Andrej Shevchenko | Closing remarks | Host |
Host: Andrej Shevchenko
Speaker: Dr. Wei Gao, a leader of MS unit at the Faculty of Psychology, TU Dresden
Topic: Research of stress biomarker based on LC-MS/MS
Date and time: 30.11.2021, 14:00.
Location: https://zoom.us/j/5587099875
Speaker: Christian Klose
Topic: Population health studies frequently rely on omics technologies but biomarker identification studies benefit only if the data are of high quality and reliably reproducible.
Date and time: 02.12.2021 17:00
More info and Registration: www.lipotype.com/lipidomics-webinars/why-population-health-studies-must-run-lipidomics
Host: Andrej Shevchenko
Speaker: Maria Fedorova, a group leader at the Center of Membrane Biochemistry and Lipid Research at the Medical Faculty of the TU Dresden
Topic: Lipid metabolism: analysis and integration
Date and time: 16.11.2021, 14:00.
Location: https://zoom.us/j/5587099875
Speaker: Christian Klose
Topic: Mouse has shown a remarkable specificity of lipids in different cells, tissues, and organs. The mouse lipidomics atlas facilitates experimental design and interpretation in mouse studies.
Date and time: 19.10.2021 17:00
More info and Registration: www.lipotype.com/lipidomics-webinars/mouse-lipidomics-for-clinical-research/
Host: Canan Has
Topic: New open-source tools for MS-based proteomics
Paper: https://www.nature.com/articles/s41467-021-22303-zhttps://doi.org/10.1093/bioinformatics/btab674
https://doi.org/10.1101/2021.07.23.453379https://www.nature.com/articles/s41467-021-22303-z
www.nature.com/articles/s41467-021-22303-z
Date and time: 12.10.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
3 talks 3 minutes each:
1. Dr. Marc: NHS-Ester Tandem Labeling in One Pot Enables 48-Plex Quantitative Proteomics
2. Dr. Kai: Isomer Selective Comprehensive Lipidomics Analysis of Phosphoinositides in Biological Samples by Liquid Chromatography with Data Independent Acquisition Tandem Mass Spectrometry
3. pre-Dr. Tobi: Ultra-fast proteomics with Scanning SWATH
4. Q&A and general discussion
Date and time: 28.09.2021 14:00
Location: ZOOM https://zoom.us/j/5587099875
Speaker: Kai Simons
Topic: Lipid metabolism homeostasis is essential for life, but the ongoing obesity pandemic threatens it. Blood lipidomics profiles may help stem the obesity affliction. Lipids are coming back.
Date and time: 21.09.2021 17:00
More info and Registration: https://www.lipotype.com/lipidomics-webinars/introduction-to-lipids-and-lipidomics/
Host: Andrej Shevchenko
Speaker: Claudia Peitzsch
Topic: Introduction to the suspension mass cytometry method
Paper: https://www.nature.com/articles/s41467-021-22303-z
Date and time: 08.06.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Agenda:
1. Olya will talk about Lipidomics and Organoids ~15 mins
2. Sofia will talk about Metabolomics and Organoids ~15 mins
3. Ignacy will talk about Proteomics and Organoids ~15 mins
4. Q&A and general discussion
Date and time: 01.06.2021 14:00
Location: ZOOM https://zoom.us/j/5587099875
Host: Kai
Topic: A combined flow injection/reversed-phase chromatography-high-resolution mass spectrometry workflow for accurate absolute lipid quantification with 13C internal standards
Paper: https://pubs.rsc.org/en/content/articlehtml/2021/an/d0an02443k
Date and time: 20.04.2021, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Andrej
Topic: Hybrid QconCAT-Based Targeted Absolute and Data-Independent Acquisition-Based Label-Free Quantification Enables In-Depth Proteomic Characterization of Wheat Amylase/Trypsin Inhibitor Extracts
Paper: https://pubs.acs.org/doi/full/10.1021/acs.jproteome.0c00752
Date and time: 13.04.2021, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Olya
Topic: LIPIC: An Automated Workflow to Account for Isotopologue-Related Interferences in Electrospray Ionization High-Resolution Mass Spectra of Phospholipids
Paper: https://pubs.acs.org/doi/abs/10.1021/jasms.1c00008
Date and time: 06.04.2021, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Agenda:
1. Overview of XL-MS methods: principles, limitations, software
2. Application
Guest stars: - Alexander von Appen (Alex starts his lab here in a few weeks) and Adrian Nievergelt (Pigino group) - will talk how XL-MS could foster their research
3. Q&A and general discussion
Host: MS Community
Topic: Protein cross-linking
Date and time: 23.03.2021 14:00
Location: ZOOM https://zoom.us/j/5587099875
Host: Olya
Topic: AI-driven Deep Visual Proteomics defines cell identity and heterogeneity
Paper: https://www.biorxiv.org/content/10.1101/2021.01.25.427969v1.full.pdf
Date and time: 16.02.2021, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Sarita Hebbar (Knust lab) and MS Community
Topic: Dynamic redox balance directs the oocyte-to-embryo transition via developmentally controlled reactive cysteine changes
Paper: https://www.pnas.org/content/pnas/115/34/E7978.full.pdf
Date and time: 02.02.2021, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Our annual get-together in the format of flash talks. Please join our friendly talks, share the news on your omics scientific landscape and stay connected.
Host: Andrej Shevchenko
Date and time: 26.01.2020, 14:00-17:00.
Location: ZOOM https://zoom.us/j/5587099875
14:00-14:05 | Dr. Andrej Shevchenko | Welcome and introduction | |
14:05-14:15 | Dr. Ignacy Rzagalinski | Fast-tracking QconCAT approach for absolute protein quantification | Shevchenko lab, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany |
14:15-14:25 | Dr. Bharath Raghuraman | Absolute quantification: Pathway to proteome | |
14:25-14:35 | Dr. Christian Klose | Lipotype's Highlights in 2020 | Lipotype, Dresden, Germany |
14:35-14:45 | Nikolai Köhler, PhD researcher | Systemic Lipidome Alterations in HCC-induced Cachexia | Pauling lab, Computational Systems Medicine on Lipids and Metabolism, Technical University Munich, Germany |
14:45-14:55 | BREAK for coffee and chat | ||
14:55-15:05 | Tim Rose, PhD researcher & Dr. Olga Vvedenskaya | Spartans project: subgroups of NAFL patients based on lipidomics | Pauling lab & Shevchenko lab |
15:05-15:15 | Anna Tkachev, PhD researcher | Extensive feature degenerecies in untargeted LC-MS experiments: how many lipid compounds are we quantifying? | Khaitovich lab, Center for Neurobiology and Brain Restoration, Skolkovo Institute of Science and Technology, Moscow, Russia |
15:15-15:25 | Aleskandra Mitina, PhD researcher | Role of breast milk lipid composition in postnatal brain development | |
15:25 - 15:35 | Dr. Matthias Pietzke | Towards a More Reliable Identification of Isomeric Metabolites Using Pattern Guided Retention Validation | Kempa lab, Proteomics and Metabolomics Platform, Max-Delbrück-Centrum for Molecular Medicine, Berlin, Germany |
15:35-15:50 | Dr. Christof Mitterer | Nano-pillar columns separation technique from Microfluidics | PharmaFluidics NV, Gent, Belgium |
15:50-16:00 | BREAK for coffee and chat | ||
16:00-16:10 | Dr. Marcus Höring | Updates from Liebisch lab and future plans | Liebisch lab, Clinical Chemistry and Laboratory Medicine, University of Regensburg, Germany |
16:10-16:20 | Dr. Iqbal Mahmud | Unraveling Fusobacterium nucleatum Mediated Metabolic Pathway Alterations in Cancer Cells using High Resolution Mass Spectrometry | Garrett Laboratory, Department of Pathology, Immunology, and Laboratory medicine, College of Medicine |University of Florida, FL, USA |
16:20-16:30 | Dr. Sofia Traikov | Metabolomics in Dresden Campus and future plans | Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany |
16:30-16:40 | Dr. Pia Hoenscheid | The national Covid project and future plans | National Center for Tumor Diseases, Dresden, Germany |
16:40-16:45 | Dr. Andrej Shevchenko | Closing remarks | |
Host: Bharath
Topic: Quantitative shotgun proteome analysis by direct infusion
Paper: https://www.nature.com/articles/s41592-020-00999-z
Date and time: 19.01.2021, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
2020 Events
Host: Alessandra
Topic: Fatty Acid Methyl Ester Profiles of Bat Wing Surface Lipids
Paper: link.springer.com/article/10.1007/s11745-014-3951-2
Date and time: 15.12.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Barbara Borgonovo (PEPC group) and MS Community
Topic: Direct characterization of overproduced proteins by native mass spectrometry
Paper: https://www.nature.com/articles/s41596-019-0233-8
Date and time: 01.12.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Yuting
Topic: Machine learning reveals serum sphingolipids as cholesterol-independent biomarkers of coronary artery disease
Paper: https://dm5migu4zj3pb.cloudfront.net/manuscripts/131000/131838/cache/131838.3-20200219144527-covered-253bed37ca4c1ab43d105aefdf7b5536.pdf
Date and time: 17.11.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Vinca (Tomancak and Rodenfels groups) and Tobi (Shevchenko lab)
Topic: Remodeling of the metabolome during early frog development
Paper: https://doi.org/10.1371/journal.pone.0016881
Date and time: 03.11.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Olya
Topic: Discovering a critical transition state from nonalcoholic hepatosteatosis to nonalcoholic steatohepatitis by lipidomics and dynamical network biomarkers
Paper: https://www.nature.com/articles/s41586-019-1876-xhttps://academic.oup.com/jmcb/article/8/3/195/2588620
Date and time: 15.09.2020, 14:00.
Location: Seminar Room 1, MPI-CBG
Host: Kai
Topic: The single-cell pathology landscape of breast cancer
Paper: https://www.nature.com/articles/s41586-019-1876-x (and basic principle here for the A-graders https://www.nature.com/articles/nmeth.2869)
Date and time: 01.09.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Bharath
Topic: Rapid, deep and precise profiling of the plasma proteome with multinanoparticle protein corona
Paper: https://www.nature.com/articles/s41467-020-17033-7
Date and time: 11.08.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Jacobo
Topic: IsoSpec2: Ultrafast Fine Structure Calculator
Paper: https://pubs.acs.org/doi/10.1021/acs.analchem.0c00959
Date and time: 28.07.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Jacobo
Topic: How to replace Excel with Python and automate everything?
Date and time: 24.07.2020, 14:00-16:00.
Location: MPI-CBG, Seminar Room 2 and/or Zoom https://us02web.zoom.us/j/5587099875
Host: Jacobo
Topic: How to replace Excel with Python and automate everything?
Date and time: 17.07.2020, 14:00.
Location: MPI-CBG, Seminar Room 1
Host: Cedric
Topic: The proteome landscape of the kingdoms of life
Paper: https://www.nature.com/articles/s41586-020-2402-x.pdf
Date and time: 14.07.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Jacobo
Topic: How to replace Excel with Python and automate everything?
Date and time: 10.07.2020, 14:00.
Location: MPI-CBG, Seminar Room 2
Host: Tobias
Topic: DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput
Paper by link https://www.nature.com/articles/s41592-019-0638-x AND https://github.com/vdemichev/diann
Date and time: 30.06.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Ignacy
Topic: Robust, reproducible and quantitative analysis ofthousands of proteomes by micro-flow LC–MS/MS
Paper by link https://www.nature.com/articles/s41467-019-13973-x#Sec19
Date and time: 16.06.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Oskar
Topics: Validation of lipidomic analysis of human plasma and serum by supercritical fluid chromatography–mass spectrometry and hydrophilic interaction liquid chromatography–mass spectrometry AND
Evaluation of lipid quantification accuracy using HILIC and RPLC MSon the example of NIST® SRM® 1950 metabolites in human plasma
Date and time: 09.06.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Kai
Topic: Structural Elucidation of Ether Glycerophospholipids Using Gas-Phase Ion/Ion Charge Inversion Chemistry
Date and time: 02.06.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Canan
Topic: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse
Paper: https://www.nature.com/articles/s41597-019-0202-7
Date and time: 26.05.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Olya & Bharath
Topic: Clinical classifiers of COVID-19 infection from novel ultra-high-throughput proteomics
Date and time: 19.05.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Alessandra Palladini
Topic: Characterization of the Lipidomic Profile of Human Coronavirus-Infected Cells: Implications for Lipid Metabolism Remodeling upon Coronavirus Replication
Paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357182/
Date and time: 12.05.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Andrej Shevchenko
Topic: Quantitative Profiling of the Human Substantia Nigra Proteome from Laser-capture Microdissected FFPE Tissue
Paper: File attached
Date and time: 05.05.2020, 13:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Olga Vvedenskaya
Topic: Newborn Screening by Tandem Mass Spectrometry. Ethical and Social Issues
Paper: File attached
Video: Introduction to Bioethics: Bioethics & the Human Body.
Date and time: 28.04.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
The next JC paper is going to be informatic-y. Please join our discussion!
Host: Jacobo Miranda Ackerman
Topic: Accelerated Isotope Fine Structure Calculation Using Pruned Transition Trees
Paper: File attached
Date and time: 21.04.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Canan Has
Topic: Detecting fabrication in large-scale molecular omics data
Paper: File attached
Date and time: 07.04.2020, 14:00.
Location: ZOOM https://zoom.us/j/5587099875
Host: Olya Vvedenskaya
Topic: Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts.
Date and time: 31.03.2020, 14:00
Location: ZOOM https://zoom.us/j/5587099875
Paper: https://www.nature.com/articles/s41467-019-14044-x.pdf
You are welcome to join. Please read the JC rules below.
We are going to have coffee breaks in Zoom once in a while just for a chat.
If you would like to join the coffee break please drop an email to olga.vvedenskayampi-cbg.de.
Host: Olya Vvedenskaya
Date and time: 28.01.2020, 14:00 – 15:00
Location: MPI-CBG, Seminar room 1
Paper: High Expression of Glycolytic Genes in Cirrhosis Correlates With the Risk of Developing Liver Cancer
https://www.frontiersin.org/articles/10.3389/fcell.2018.00138/full
You are welcome to join. Please read the JC rules below.
Host: Canan Has
Date and time: 14.01.2020, 14:00 – 15:00
Location: MPI-CBG, Seminar room 1
Paper: Longitudinal multi-omics of host–microbe dynamics in prediabetes
https://www.nature.com/articles/s41586-019-1236-x.pdf
You are welcome to join. Please read the JC rules.
2019 Events
Event: X-Mass updates'19
Host: Andrej Shevchenko
Date and time: 17.12.2019, 13:00-17:30
Location: MPI-CBG, Galleria
| 13:00-13:05 | Intro -Andrej Shevchenko- |
| 13:05-13:10 | Knowing each other -introduction round- |
| 13:10-13:40 | LipidXplorer changes... -Jacobo Miranda Ackerman- |
| 13:40-14:10 | Untargeted steroidomics for identifying new adrenal steroids -Paal William Wallace- |
| 14:10-14:40 | Lipotype Shotgun Lipidomics - an update -Christian Klose, Ronny Herzog and Mathias Gerl- |
| 14:40-15:00 | Coffee break |
| 15:00-15:30 | Accelerator mass spectrometry: Detection of "One in a Quadrillion" -Silke Merchel, Johannes Lachner, Georg Rugel, Anton Wallner- |
| 15:30-15:50 | Quantitative Fragmentation Model for Bottom-up Shotgun Lipidomics -Kai Schumann- |
| 15:50-16:20 | Lipid Gold Digger: Building the Shotgun Lipidomics data analysis pipeline -Alessandra Palladini- |
| 16:20-16:50 | Multiomics data integration: Seven layer cake -Canan Has- |
| 16:50-17:30 | Closing remarks -Andrej Shevchenko- |
You are welcome!
2018 Events
Event: X-Mass updates'18
Host: Andrej Shevchenko
Date and time: 18.12.2018, 13:00-16:45
Location: MPI-CBG, Galleria
| 13:00-13:10 | Intro -Andrej Shevchenko- |
| 13:10-13:35 | PeakStrainer & LipidXplorer commercial -Jacobo Miranda Ackerman- |
| 13:35-14:00 | Shotgun Lipidomics Combined with Laser Capture Microdissection -Oskar Knittelfelder- |
| 14:00-14:25 | Lipid markers of psychiatric disorders in blood plasma -Philipp Khaitovich’s lab, SkolTech, Moscow, Russia- |
| 14:25-14:50 | Role of breast milk lipid composition in postnatal brain development -Philipp Khaitovich’s lab, SkolTech, Moscow, Russia- |
| 14:50-15:00 | Coffee break |
| 15:00-15:25 | Lipid Brain Map of human and primates -Philipp Khaitovich’s lab, SkolTech, Moscow, Russia- |
| 15:30-15:55 | LC-MS lipidomics of adipose tissue -Mike Lange- |
| 15:55-16:20 | Organwide mouse lipidomics project -Alessandra Palladini- |
| 16:20-16:45 | Closing remarks -Andrej Shevchenko- |
You are welcome!