Mass Spectrometry at Dresdner Campus: A Road Map

MS Community Dresden:

The MS Community provides support to biological and clinical research projects carried at the Campus. It comprises MS-Facilities and MS-research groups from the MPI CBG, UKD, CMCB (TUD), CRTD and NCT, and Lipotype GmbH. The sites host more than 20 high-end MS instruments and have expertise in MS-based Lipidomics, Proteomics and Metabolomics. We work on service base and open for research collaborations. To our activities belong regular meetings, organization of ms-events, MS journal club and scientific consulting.

Events schedule

2024

MS Community Journal Club
Speaker: Dr. Angie Mc Ardle, Co-founder bproteomics.com
Titles: Translating Proteomic Markers into Clinical Practice?
Date: June 18th 2024, 2:00 pm CET
Papers:  https://doi.org/10.1016/j.cca.2021.05.011, https://www.mcponline.org/article/S1535-9476(20)32062-4/fulltext
Zoom: https://eu02web.zoom-x.de/j/62775784188?pwd=K0N2VEJRazdJSU5IT2ZXNTd3M2dnZz09
Meeting ID: 627 7578 4188 Passcode: 587993
Everybody is welcome!

Extraordinary MS Community Technology Seminar with Evosep (in-person)
Host: Lab Shevchenko
Speakers: Dr. Britta Diedrich (Sales DACH) and Djordje Vasiljevic (Product specialist), Evosep
Titles: Introduction to EvosepOne technology
Date: June 5th (Wed), 2pm CET
Location: MPI-CBG Pfotenhauerstrasse 108 Dresden, Gallery I (second floor)

ZML seminar (in-person)
Speaker: Dr. Itay Budin, UCSD
Titles: The private lives of lipids: imaging membrane composition in cells & deciphering its adaption to extremes of deep-sea
Date: May 27th, 3pm CET
Location: BioZ Dresden, 5th floor
Everybody is welcome!

MS Community Journal Club
Speaker: Dr. Agnes Toth-Petroczy, MPI-CBG
Titles: Transcriptional and translational stop codon miscoding
Date: May 23rd (Thu) 2024, 2:00 pm CET. Hybrid format!
Paper: https://doi.org/10.1101/2023.02.01.526636
In-person: CSBD Bld TopFloor; Zoom:https://eu02web.zoom-x.de/j/67694442092?pwd=NDFCc0lnQ1l6MWZqb3NacklkNTlVQT09
Everybody is welcome!

MS Community Journal Club
Speaker: Dr. Mukesh Kumar - First Author Presents!
Titles: Interplay between lipidome and proteome and its impact on fly eye structure and function
Date: April 23rd 2024, 2:00 pm CET
Paper: https://pubs.acs.org/doi/10.1021/acs.jproteome.3c00570
Zoom: https://eu02web.zoom-x.de/j/65980885277?pwd=TzV2bHBqb1RQL3lZak55M1pQNnByUT09
Everybody is welcome!

12 Lipotype Lipidomics Webinar
Speaker: Dr. Mathias Gerl
Duration: 30 min + Q&A after the talk
Titles: How to deal with lipidomics data?
Date: April 23rd, 5pm CET
Free registration: https://www.lipotype.com/lipidomics-webinars/how-to-deal-with-lipidomics-data/#register
Everybody is welcome!

Joint session Mass Spec and MPI Membrane Journal Clubs
Speakers: Swantje Lenz and Alexander von Appen, MPI-CBG Dresden
Topic: Cross-linking Mass Spectrmetry approach (XL-MS) for biologists
Date: (Wed) April 17th 2024, 2:00 pm CET, HYBRID format
Virtual: Zoom https://eu02web.zoom-x.de/j/66250788214?pwd=SEhFWFBIcU1IaTc5dkZBcmRwTUJrUT09
In-person location: Seminar Room 1, MPI-CBG, Pfotenhauerstrasse 108 Dresden
Everybody is welcome!

ZML seminar (in-person)
Speaker: Dr.Anton Potapov, Senckenberg Museum für Naturkunde, Görlitz
Host: Prof. Maria Fedorova, ZML, TUD
Titles: Applications of the fatty acid analysis in ecology:understanding microbial communities & food webs
Date: April 12th, 10:30am CET
Location: CUBE Tatzberg 41, 01307 Dresden, SR B (E74) and SR C (E73)
Everybody is welcome!

MS Journal Club
Speakers: Marc Gentzel, Proteomics Core Facility, CMCB, Dresden
Titles: Organoids, the major new biological model system? (Prote-) Omic Analysis
Date: March 19th 2pm CET Zoom
Papers: https://nature.com/articles/s41419-020-03379-9 doi.org/10.15252/msb.20188227
Zoom: https://eu02web.zoom-x.de/j/64736626013?pwd=dTl2RlBJa0g1SFlISFhvNEt3Z200QT09
Everybody is welcome!

MS Journal Club
Speakers: Henrik Thomas and Jonas Poehls, MPI-CBG/CSBD
Titles: De-novo peptide sequence prediction - what's new?
Date: February 20th 2024, 2:00 pm CET, IN-PERSON
Paper: https://nature.com/articles/s41467-023-44323-7
Meeting location: CSBD bldg, Top Floor SR
Everybody is welcome!

MS Community Journal Club
Speaker: Sider Penkov, Fedorova Lab, ZML, TU Dresden
Titles: LiLa - lipid annotation workflow for lung tissue lipidomics
Date: February 13th 2024, 2:00 pm CET
Paper: https://doi.org/10.1038/s42003-023-05680-7
Zoom: https://eu02web.zoom-x.de/j/68914572030?pwd=Wlp5bWFwTUR0WHBhL25xRUpQTUhBQT09
Meeting ID: 689 1457 2030 Passcode: 058557
Everybody is welcome!

MS Community Journal Club
Speaker: Mirko Peitzsch, Clinical Metabolomics Unit, IKL, TU Dresden
Titles: Characterization of the Human Exposome by Quantitative Metabolomics Platform
Date: Jan 23rd 2024, 2:00 pm CET
Paper:  https://doi.org/10.1021/acs.analchem.0c02008
Zoom: https://eu02web.zoom-x.de/j/66908820123?pwd=aldjYmJ6Yk43ZlRRd0p0TmFKVTQvdz09
Meeting ID: 669 0882 0123 Passcode: 590730
Everybody is welcome!

News

June 2024

  • June 2-6th MS Community Dresden participates at 72nd ASMS 2024 conference (Anaheim, US). Olga Vvedenskaya (Lipotype GmbH) is given science communication workshop and Lab Shevchenko co-authors presentation of C4L community project "A multi-year longitudinal harmonization of quality controls in mass spectrometry proteomics core facilities". www.asms.org/conferences/annual-conference/annual-conference-homepage

May 2024

  • May 13-15th Dresden hosts 5th EpiLipidNet Annual Meeting of Pan-European Network in Lipidomics and Epilipidomics with over 150 participants organized by Prof. Maria Fedorova (TUD). Prof. Kai Simons (Lipotype GmbH) and Dr. Andrej Shevchenko (MPI CBG) have invited talks. https://www.epilipid.net/events/
  • Dresden MS Community presents latest lipid research on the 2nd Gordon Lipidomics Conference & Seminar 4-10th May 2024, Lucca (Barga), Italy. Dr. Silvia Radrezza (Shevchenko Lab, MPI-CBG), Prof. Maria Fedorova (Fedorova Lab, TUD) and Dr. Christian Klose (Lipotype GmbH) have oral presentations. https://www.grc.org/lipidomics-conference/2024/; https://www.grc.org/lipidomics-grs-conference/2024/

April 2024

  • Great news! Dr. Maria Fedorova has been appointed as Professor and Chair of Lipidome Research at ZML Medical Faculty TUD. Congratulations!

MS Journal Club for Users (MS4U)

MS4U was launched in 2020 to build a bridge between MS Community and scientists working in biological and clinical research at Dresdner campus. Here we discuss articles selected by YOU.
You found a hot paper related to your scientific topic but...
- do not understand ms-method?
- unsure if it fosters YOUR project?
- unclear if this is routine or only runs in a single lab?
- and, how it practically works?
Once you suggest an article or topic, we will look for complementary articles published by leading practitioners in this field and then analyze them together with you. MS-Lipidomics, MS-proteomics, MS-metabolomics, MS-imaging, any MS - let's discuss it with MS-Profis from the entire Dresden campus!
Submit YOUR HOT PAPER suggestion by clinical.lipidomics@mpi-cbg.de

The JC rules are the following:

  1. The assigned person choses the paper in advance and sends it around, but does not present it.
  2. Most importantly, Everyone Reads the Paper!
  3. Starting person (randomly chosen) describes (questiones, criticizes) the first figure/paragraph/topic, and all together we try to figure out what authors wanted to say. The second person (randomly chosen) describes the second figure and so on.
  4. Please come if you read the paper.
  5. If you bring your colleagues or friends, make sure that they are aware of the rules.