Muhar, M. F., Farnung, J., Cernakova, M., Hofmann, R., Henneberg, L. T., Pfleiderer, M. M., Denoth-Lippuner A., Kalčic F., Nievergelt A.S., Peters Al-Bayati M., Sidiropoulos N.D., Beier V., Mann M., Jessberger S., Jinek M., Schulman B. A., Bode J. W., Corn, J. E. (2025). C-terminal amides mark proteins for degradation via SCF–FBXO31. Nature, 638(8050), 519-527. DOI: 10.1038/s41586-024-08475-w
Farnung J., Muhar M., Liang J. R., Tolmachova K. A., Benoit,R. M., Corn,J. E., & Bode J. W. (2023). Semisynthetic LC3 probes for autophagy pathways reveal a noncanonical LC3 interacting region motif crucial for the enzymatic activity of human ATG3. ACS Central Science, 9(5), 1025-1034. DOI: 10.1021/acscentsci.3c00009
Diesch J., Le Pannérer M. M., Winkler R., Casquero R., Muhar M., Van Der Garde M., Maher M., Martínez Herráez C., Bech-Serra J. J., Fellner M., Philipp Rathert P., Nigel Brooks N., Zamora L., Gentilella A., de la Torre C., Zuber J., Götze, K. S., Buschbeck M. (2021). Inhibition of CBP synergizes with the RNA-dependent mechanisms of Azacitidine by limiting protein synthesis. Nature Communications, 12(1), 6060. DOI: 10.1038/s41467-021-26258-z
Endres, T., Solvie, D., Heidelberger, J. B., Andrioletti, V., Baluapuri, A., Ade, C. P., Muhar M., Eilers U., Vos S. M., Cramer P., Zuber J., Beli P., Popov N., Wolf E., Gallant P, Eilers, M. (2021). Ubiquitylation of MYC couples transcription elongation with double-strand break repair at active promoters. Molecular Cell, 81(4), 830-844. DOI: 10.1016/j.molcel.2020.12.035
Liang J. R., Lingeman,E., Luong T., Ahmed S., Muhar M., Nguyen T., Olzman J. A., Corn J. E. (2020). A genome-wide ER-phagy screen highlights key roles of mitochondrial metabolism and ER-resident UFMylation. Cell, 180(6), 1160-1177. DOI: 10.1016/j.cell.2020.02.017
Thiecke M. J., Wutz G. Muhar M., Tang W., Bevan S., Malysheva V., Stocsits R., Neumann T., Zuber J., Fraser P., Schoenfelder S., Peters J., Spivakov M. (2020). Cohesin-dependent and-independent mechanisms mediate chromosomal contacts between promoters and enhancers. Cell Reports, 32(3). DOI: 10.1016/j.celrep.2020.107929
Neumann T., Herzog V.A., Muhar M., von Haeseler A., Zuber J., Ameres S.L., Rescheneder P. (2019) Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets. BMC bioinformatics, 20(1), 258. DOI: 10.1186/s12859-019-2849-7
Muhar M., Ebert A., Neumann T., Umkehrer C., Jude J., Wieshofer C., Rescheneder P., Lipp J. J., Herzog V. A., Reichholf B., Cisneros D. A., Hoffmann T., Schlapansky M. F., Bhat P., Haeseler A. von, Köcher T., Obenauf A. C., Popow J., Ameres S. L., Zuber J., (2018) SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis. Science, 360(6390), 800-805. DOI: 10.1126/science.aao2793
Skucha A., Ebner J., Schmöllerl J., Roth M., Eder T., César-Razquin A., Stukalov A., Vittori S., Muhar M., Lu B., Aichinger M., Jude J., Müller A. C., Győrffy B., Vakoc C. R., Valent P., Bennett K. L., Zuber J., Superti-Furga G., Grebien F. (2018) MLL-fusion-driven leukemia requires SETD2 to safeguard genomic integrity. Nature Communications, 9(1), 1983. DOI: 10.1038/s41467-018-04329-y
Wutz G., Várnai C., Nagasaka K., Cisneros D. A., Stocsits R. R., Tang W., Schoenfelder S., Jessberger G., Muhar M., Hossain M. J., Walther N., Koch B., Kueblbeck M., Ellenberg J., Zuber J., Fraser P., Peters J., (2017) Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins. EMBO Journal, 36(24), 3573-3599. DOI: 10.15252/embj.201798004
Housden B. E., Muhar M., Gemberling M., Gersbach C. A., Stainier D. Y. R., Seydoux G., Mohr S. E., Zuber J., Perrimon N., (2016) Loss-of-function genetic tools for animal models: cross-species and cross-platform differences. Nature Reviews Genetics, 18(1), 24-40. DOI: 10.1038/nrg.2016.118
Rathert P., Roth M., Neumann T., Muerdter F., Roe J.-S., Muhar M., Deswal S., Cerny-Reiterer S., Peter B., Jude J., Hoffmann T., Boryń Ł. M., Axelsson E., Schweifer N., Tontsch-Grunt U., Dow L. E., Gianni D., Pearson M., Valent P., Stark A., Kraut N., Vakoc C. R., Zuber J., (2015) Transcriptional plasticity promotes primary and acquired resistance to BET inhibition. Nature, 525(7570), 543-547. DOI: 10.1038/nature14898
Shi J., Whyte W. a., Zepeda-Mendoza C. J., Milazzo J. P., Shen C., Roe J.-S., Minder J. L., Mercan F., Wang E., Eckersley-Maslin M. a., Campbell a. E., Kawaoka S., Shareef S., Zhu Z., Kendall J., Muhar M., Haslinger C., Yu M., Roeder R. G., Wigler M. A., Blobel G. A., Zuber J., Spector D. L., Young R. A., Vakoc C. R., (2013) Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation. Genes and Development, 27(24), 2648-2662. DOI: 10.1101/gad.232710.113
Fellmann C., Hoffmann T., Sridhar V., Hopfgartner B., Muhar M., Roth M., Lai D. Y., Barbosa I. A. M., Kwon J. S., Guan Y., Sinha N., Zuber J., (2013) An optimized microRNA backbone for effective single-copy RNAi. Cell Reports, 1704-1713. DOI: 10.1016/j.celrep.2013.11.020
Wienerroither S., Rauch I., Rosebrock F., Jamieson A. M., Bradner J., Muhar M., Zuber J., Müller M., Decker T., (2013) Regulation of NO synthesis, local inflammation and innate immunity to pathogens by BET family proteins. Molecular and Cellular Biology , 34(3), 415-427. DOI: 10.1128/MCB.01353-13