Agnes Toth-Petroczy Group

MPI-CBG > Research > Research Groups > Current Groups > Agnes Toth-Petroczy > Software

Tools and databases developed by the ATPlab

Visit our gitlab page:  https://git.mpi-cbg.de/tothpetroczylab/

Web Applications:

CrowDsourcing COndensate Database and Encyclopaedia

Web: https://cd-code.org/

Code: https://git.mpi-cbg.de/dd-code-team/

DOI: 10.1038/s41592-023-01831-0

Command Line Tools:

SHARK (Similarity/Homology Assessment by Relating K-mers)

Code: https://git.mpi-cbg.de/tothpetroczylab/shark

DOI: 10.1073/pnas.2401622121

PyPI: https://pypi.org/project/bio-shark/

 

SHARK-capture: Python package for finding conserved motifs (k-mers) amongst a set of (similar) sequences.

Code: https://git.mpi-cbg.de/tothpetroczylab/shark

DOI: 10.1002/pro.70091

PyPI: https://pypi.org/project/bio-shark/

deTELpy: Python package for high-throughput detection of amino acid substitutions in mass spectrometry datasets.

Code: https://git.mpi-cbg.de/tothpetroczylab/detelpy

DOI: 10.1093/bioinformatics/btae424

PyPI: https://pypi.org/project/deTELpy/

PICNIC (Proteins Involved in CoNdensates In Cells)

Code: https://git.mpi-cbg.de/tothpetroczylab/picnic

DOI: 10.1038/s41467-024-55089-x

PyPI: https://pypi.org/project/picnic-bio/