Code available from projects

Sampling real algebraic varieties.
Sampling package source code

Decomposing parameter space.
Code for numerical discriminant locus and creating movie

Roadmap for computation of persistent homology: benchmarking PH software.
Code for translating between PH software packages and data repository

Multi-parameter persistent homology.
See Appendix for Macaulay2 code
Software package is currently being developed

Model selection using numerical algebraic geometry.
Files using in Numerical Algebraic Geometry for Model Selection paper

Parameter sensitivity of RNA secondary structure using geometric combinatorics.
Software package to compute branching polytope and parameter sensitivity

Steady-state invariant model comparison.
Sage worksheet 1 available in supplementary information
Sage worksheet 2 available in supplementary information