MPI-CBG: Publications

POSTDOC PROGRAM

Postdoc Publications

To search through the MPI-CBG publications click here.

2020

Lydie Flasse, Siham Yennek, Cédric Cortijo, Irene Seijo Barandiaran, Marine R-C Kraus, Anne Grapin-Botton
Apical Restriction of the Planar Cell Polarity Component VANGL in Pancreatic Ducts Is Required to Maintain Epithelial Integrity.
Cell Rep, 31(8) Art. No. 107677 (2020)

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Aniruddha Mitra, Laura Meißner, Rojapriyadharshini Gandhimathi, Roman Renger, Felix Ruhnow, Stefan Diez
Kinesin-14 motors drive a right-handed helical motion of antiparallel microtubules around each other.
Nat Commun, 11(1) Art. No. 2565 (2020)

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Christiane Iserman, Christine Desroches Altamirano, Ceciel Jegers, Ulrike Friedrich, Taraneh Zarin, Anatol Fritsch, Matthäus Mittasch, Antonio Domingues, Lena Hersemann, Marcus Jahnel, Doris Richter, Ulf-Peter Guenther, Matthias W. Hentze, Alan M Moses, Anthony Hyman, Günter Kramer, Moritz Kreysing, Titus Franzmann, Simon Alberti
Condensation of Ded1p Promotes a Translational Switch from Housekeeping to Stress Protein Production.
Cell, 181(4) 818-831 (2020)

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Nereo Kalebic, Barbara Langen, Jussi Helppi, Hiroshi Kawasaki, Wieland Huttner
In Vivo Targeting of Neural Progenitor Cells in Ferret Neocortex by In Utero Electroporation.
J Vis Exp, (159) Art. No. e61171 (2020)

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Alexandra Lewis, Ahmet C Berkyurek, Andre Greiner, Ahilya N Sawh, Ajay A Vashisht, Stephanie Merrett, Mathieu N Flamand, James Wohlschlegel, Mihail Sarov, Eric A Miska, Thomas F Duchaine
A Family of Argonaute-Interacting Proteins Gates Nuclear RNAi.
Mol Cell, Art. No. doi: 10.1016/j.molcel.2020.04.007 (2020)

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Jordina Guillén-Boixet, Andrii Kopach, Alex S Holehouse, Sina Wittmann, Marcus Jahnel, Raimund Schlüßler, Kyoohyun Kim, Irmela Trussina, Jie Wang, Daniel Mateju, Ina Poser, Shovamayee Maharana, Martine Ruer-Gruß, Doris Richter, Xiaojie Zhang, Young-Tae Chang, Jochen Guck, Alf Honigmann, Julia Mahamid, Anthony Hyman, Rohit V Pappu, Simon Alberti, Titus Franzmann
RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation.
Cell, 181(2) 346-361 (2020)

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Ayse Güven, Nereo Kalebic, Katherine S. Long, Marta Florio, Samir Vaid, Holger Brandl, Denise Stenzel, Wieland Huttner
Extracellular matrix-inducing Sox9 promotes both basal progenitor proliferation and gliogenesis in developing neocortex.
Elife, 9 Art. No. e49808 (2020)

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Alexander Krull, Peter Hirsch, Carsten Rother, Augustin Schiffrin, C Krull
Artificial-intelligence-driven scanning probe microscopy
Communications Physics, 3(1) Art. No. 54 (2020)

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Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean-Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia
A metabolic switch regulates the transition between growth and diapause in C. elegans.
BMC Biol, 18(1) Art. No. 31 (2020)

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Oskar Knittelfelder, Elodie Prince, Susanne Sales, Eric Fritzsche, Thomas Wöhner, Marko Brankatschk, Andrej Shevchenko
Sterols as dietary markers for Drosophila melanogaster.
Biochim Biophys Acta Mol Cell Biol Lipids, 1865(7) Art. No. 158683 (2020)

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Virag Sharma, Felix Walther, Nikolai Hecker, Heiko Stuckas, Michael Hiller
Convergent losses of TLR5 suggest altered extracellular flagellin detection in four mammalian lineages.
Mol Biol Evol, Art. No. doi: 10.1093/molbev/msaa058 (2020)

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Takashi Namba, Judit Dóczi, Anneline Pinson, Lei Xing, Nereo Kalebic, Michaela Wilsch-Bräuninger, Katherine S. Long, Samir Vaid, Janelle Lauer, Aliona Bogdanova, Barbara Borgonovo, Anna Shevchenko, Patrick Keller, David N. Drechsel, Teymuras V. Kurzchalia, Pauline Wimberger, Christos Chinopoulos, Wieland Huttner
Human-Specific ARHGAP11B Acts in Mitochondria to Expand Neocortical Progenitors by Glutaminolysis.
Neuron, 105(5) 867-881 (2020)

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Ritika Giri, Dimitrios Papadopoulos, Diana M Posadas, Hemanth K Potluri, Pavel Tomancak, Madhav Mani, Richard W Carthew
Ordered patterning of the sensory system is susceptible to stochastic features of gene expression.
Elife, 9 Art. No. e53638 (2020)

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Laia Leria, Miquel Vila-Farré, Marta Álvarez-Presas, Alejandro Sánchez-Gracia, Julio Rozas, Ronald Sluys, Marta Riutort
Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability.
Mol. Phylogenet. Evol., 143 Art. No. 106496 (2020)

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Kirstin Meyer, Hernán Morales-Navarrete, Sarah Seifert, Michaela Wilsch-Braeuninger, Uta Dahmen, Elly M. Tanaka, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial
Bile canaliculi remodeling activates YAP via the actin cytoskeleton during liver regeneration.
Mol Syst Biol, 16(2) Art. No. e8985 (2020)

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Satu Kujawski, Catia Crespo, Marta Luz, Michaela Yuan, Sylke Winkler, Elisabeth Knust
Loss of Crb2b-lf leads to anterior segment defects in old zebrafish.
Biol Open, Art. No. bio.047555 (2020)

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Adam Klosin, F Oltsch, T Harmon, Alf Honigmann, Frank Jülicher, Anthony A. Hyman, Christoph Zechner
Phase separation provides a mechanism to reduce noise in cells.
Science, 367(6476) 464-468 (2020)

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Priyanka Sharma, Sameena Parveen, Lekha V Shah, Madhumita Mukherjee, Yannis Kalaidzidis, Anthony J Kozielski, Roberto Rosato, Jenny C Chang, Sunando Datta
SNX27-retromer assembly recycles MT1-MMP to invadopodia and promotes breast cancer metastasis.
J Cell Biol, 219(1) Art. No. e201812098 (2020)

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Virag Sharma, Michael Hiller
Losses of human disease-associated genes in placental mammals
NAR Genomics and Bioinformatics, 2(1) Art. No. doi: 10.1093/nargab/lqz012 (2020)

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Robert Haase, Loic Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, Eugene W Myers
CLIJ: GPU-accelerated image processing for everyone.
Nat Methods, 17(1) 5-6 (2020)

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Martin Pippel, David Jebb, Franziska Patzold, Sylke Winkler, Heiko Vogel, Gene Myers, Michael Hiller, Anna K Hundsdoerfer
A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae).
GigaScience, 9(1) Art. No. giaa001 (2020)

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Nikolai Hecker, Michael Hiller
A genome alignment of 120 mammals highlights ultraconserved element variability and placenta-associated enhancers.
GigaScience, 9(1) Art. No. giz159 (2020)

2019

Gopi Shah, Konstantin Thierbach, Benjamin Schmid, Jens Waschke, Anna Reade, Mario Hlawitschka, Ingo Roeder, Nico Scherf, Jan Huisken
Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish.
Nat Commun, 10(1) Art. No. 5753 (2019)

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Ekaterina S Lobanova, Kai Schuhmann, Stella Finkelstein, Tylor R Lewis, Martha A Cady, Ying Hao, Casey Keuthan, John D Ash, Marie E Burns, Andrej Shevchenko, Vadim Y Arshavsky
Disrupted Blood-Retina Lysophosphatidylcholine Transport Impairs Photoreceptor Health But Not Visual Signal Transduction.
J Neurosci, 39(49) 9689-9701 (2019)

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Tatsunori Seki, Tomokatsu Hori, Hajime Miyata, Michiyo Maehara, Takashi Namba
Analysis of proliferating neuronal progenitors and immature neurons in the human hippocampus surgically removed from control and epileptic patients.
Sci Rep, 9(1) Art. No. 18194 (2019)

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Fabián Segovia-Miranda, Hernán Morales-Navarrete, Michael Kücken, Vincent Moser, Sarah Seifert, Urska Repnik, Fabian Rost, Mario Brosch, Alexander Hendricks, Sebastian Hinz, Christoph Röcken, Dieter Lütjohann, Yannis Kalaidzidis, Clemens Schafmayer, Lutz Brusch, Jochen Hampe, Marino Zerial
Three-dimensional spatially resolved geometrical and functional models of human liver tissue reveal new aspects of NAFLD progression.
Nat Med, 25(12) 1885-1893 (2019)

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Hanh Thi-Kim Vu, Sarah Mansour, Michael Kücken, Corinna Blasse, Claire Basquin, Juliette Azimzadeh, Eugene W Myers, Lutz Brusch, Jochen Rink
Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks.
Dev Cell, 51(4) 526-542 (2019)

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Janelle Lauer, Sandra Segeletz, Alice Cezanne, Giambattista Guaitoli, Francesco Raimondi, Marc Gentzel, Vikram Alva, Michael Habeck, Yannis Kalaidzidis, Marius Ueffing, Andrei N Lupas, Christian Johannes Gloeckner, Marino Zerial
Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding.
Elife, 8 Art. No. e46302 (2019)

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Fabio Cunial, Jarno Alanko, Djamal Belazzougui
A framework for space-efficient variable-order Markov models.
Bioinformatics, 35(22) 4607-4616 (2019)

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Oliver Beutel, Riccardo Maraspini, Karina Pombo-García, Cécilie Martin-Lemaitre, Alf Honigmann
Phase Separation of Zonula Occludens Proteins Drives Formation of Tight Junctions.
Cell, 179(4) 923-936 (2019)

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Pavel Vopalensky, Maria Antonietta Tosches, Kaia Achim, Mette Handberg-Thorsager, Detlev Arendt
From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain.
BMC Biol, 17(1) Art. No. 81 (2019)

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Gabriella Shull, Christiane Haffner, Wieland Huttner, Suhasa B Kodandaramaiah, Elena Taverna
Robotic platform for microinjection into single cells in brain tissue.
EMBO Rep, 20(10) Art. No. e47880 (2019)

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Juliana G. Roscito, Michael Hiller
Methods to Detect and Associate Divergence in Cis-Regulatory Elements to Phenotypic Divergence.
In: Evolution, Origin of Life, Concepts and Methods . (Eds.) Pierre Pontarotti,Cham,Springer International Publishing (2019),113-134 Ch. 6

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Sabina Kanton, Michael James Boyle, Zhisong He, Malgorzata Santel, Anne Weigert, Fátima Sanchís-Calleja, Patricia Guijarro, Leila Sidow, Jonas Simon Fleck, Dingding Han, Zhengzong Qian, Michael Heide, Wieland Huttner, Philipp Khaitovich, Svante Pääbo, Barbara Treutlein, J Gray Camp
Organoid single-cell genomic atlas uncovers human-specific features of brain development.
Nature, 574(7778) 418-422 (2019)

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Martin Maska, Tereza Necasova, David Wiesner, Dmitry V. Sorokin, Igor Peterlik, Vladimir Ulman, David Svoboda
Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy.
In: 2019 IEEE International Conference on Image Processing : proceedings : September 22-25, 2019, Taipei International Convention Center (TICC), Taipei, Taiwan (2019), Piscataway, N.J., IEEE (2019), 819-823

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Natalie Dye, Ali Mahmoud, K. Venkatesan Iyer, Ivona Mateska, Suhrid Ghosh, Ioannis Nellas, Romina Piscitello-Gómez, Salma Ahmed Zeidan, Jana Fuhrmann, Allison Lewis, Abhijeet Krishna
Suzanne Eaton (1959-2019) Obituary
Dev Cell, 50(6) 680-682 (2019)

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Kai Schuhmann, HongKee Moon, Henrik Thomas, Jacobo Miranda Ackerman, Michael Groessl, Nicolai Wagner, Markus Kellmann, Ian Henry, André Nadler, Andrej Shevchenko
Quantitative Fragmentation Model for Bottom-Up Shotgun Lipidomics.
Anal Chem, 91(18) 12085-12093 (2019)

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Kathrin Schmeisser, J Alex Parker
Pleiotropic Effects of mTOR and Autophagy During Development and Aging.
Front Cell Dev Biol, 7 Art. No. 192 (2019)

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Mario Ivankovic, Radmila Haneckova, Albert Thommen, Markus Grohme, Miquel Vila-Farré, Steffen Werner, Jochen Rink
Model systems for regeneration: planarians.
Development, 146(17) Art. No. dev167684 (2019)

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Valerie Siahaan, Jochen Krattenmacher, Anthony Hyman, Stefan Diez, Amayra Hernández-Vega, Zdenek Lansky, Marcus Braun
Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes.
Nat Cell Biol, 21(9) 1086-1092 (2019)

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Matthias Huelsmann, Nikolai Hecker, Mark S Springer, John Gatesy, Virag Sharma, Michael Hiller
Genes lost during the transition from land to water in cetaceans highlight genomic changes associated with aquatic adaptations.
Sci Adv, 5(9) Art. No. eaaw6671 (2019)

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Edgar Boczek, Qi Luo, Marco Dehling, Michael Röpke, Sophie L Mader, Andreas Seidl, Ville R I Kaila, Johannes Buchner
Autophosphorylation activates c-Src kinase through global structural rearrangements.
J Biol Chem, 294(35) 13186-13197 (2019)

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Mauricio Rocha-Martins, Beatriz C de Toledo, Pedro Santos-França, Viviane Oliveira-Valença, Carlos Vieira-Vieira, Gabriel Matos-Rodrigues, Rafael Linden, Caren Norden, Rodrigo Martins, Mariana Silveira
De novo genesis of retinal ganglion cells by targeted expression of Klf4 in vivo.
Development, 146(16) Art. No. dev176586 (2019)

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Angelina S Gross, Andreas Zimmermann, Tobias Pendl, Sabrina Schroeder, Hannes Schoenlechner, Oskar Knittelfelder, Laura Lamplmayr, Ana Santiso, Andreas Aufschnaiter, Daniel Waltenstorfer, Sandra Ortonobes Lara, Sarah Stryeck, Christina Kast, Christoph Ruckenstuhl, Sebastian J Hofer, Birgit Michelitsch, Martina Woelflingseder, Rolf Müller, Didac Carmona-Gutierrez, Tobias Madl, Sabrina Büttner, Kai-Uwe Fröhlich, Andrej Shevchenko, Tobias Eisenberg
Acetyl-CoA carboxylase 1-dependent lipogenesis promotes autophagy downstream of AMPK.
J Biol Chem, 294(32) 12020-12039 (2019)

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Anna Bajur, K Venkatesan Iyer, Elisabeth Knust
Cytocortex-dependent dynamics of Drosophila Crumbs controls junctional stability and tension during germ band retraction.
J Cell Sci, 132(15) Art. No. jcs228338 (2019)

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Kassiani Skouloudaki, Ioannis Christodoulou, Dilan Khalili, Vasilios Tsarouhas, Christos Samakovlis, Pavel Tomancak, Elisabeth Knust, Dimitrios Papadopoulos
Yorkie controls tube length and apical barrier integrity during airway development.
J Cell Biol, 218(8) 2762-2781 (2019)

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Laura Mediani, Jordina Guillén-Boixet, Jonathan Vinet, Titus Franzmann, Ilaria Bigi, Daniel Mateju, Arianna D Carrà, Federica F Morelli, Tatiana Tiago, Ina Poser, Simon Alberti, Serena Carra
Defective ribosomal products challenge nuclear function by impairing nuclear condensate dynamics and immobilizing ubiquitin.
EMBO J, 38(15) Art. No. e101341 (2019)

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Christian Franke, Urska Repnik, Sandra Segeletz, Nicolas Brouilly, Yannis Kalaidzidis, Jean-Marc Verbavatz, Marino Zerial
Correlative single-molecule localization microscopy and electron tomography reveals endosome nanoscale domains.
Traffic, 20(8) 601-617 (2019)

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Nikolai Hecker, Ulla Lächele, Heiko Stuckas, Peter Giere, Michael Hiller
Convergent vomeronasal system reduction in mammals coincides with convergent losses of calcium signalling and odorant-degrading genes.
Mol. Ecol., 28(16) 3656-3668 (2019)

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Ariel O Donayo, Radia M Johnson, Hsin-Wei Tseng, Said Izreig, Alexandra Gariepy, Vinay K Mayya, Edlyn Wu, Roshni Alam, Carine Lussier, Russell G Jones, Thomas F Duchaine
Oncogenic Biogenesis of pri-miR-17∼92 Reveals Hierarchy and Competition among Polycistronic MicroRNAs.
Mol Cell, 75(2) 340-356 (2019)

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Adrian Pascal Nievergelt, Gonzalo Alvarez Viar, Gaia Pigino
Towards a mechanistic understanding of cellular processes by cryoEM.
Curr. Opin. Struct. Biol., 58 149-158 (2019)

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Aleksandra Spiegel, Mandy Bachmann, Gabriel Jurado Jiménez, Mihail Sarov
CRISPR/Cas9-based knockout pipeline for reverse genetics in mammalian cell culture.
Methods, 164-165 49-58 (2019)

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Anneline Pinson, Takashi Namba, Wieland Huttner
Malformations of Human Neocortex in Development - Their Progenitor Cell Basis and Experimental Model Systems.
Front Cell Neurosci, 13 Art. No. 305 (2019)

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Steven D. Briscoe, Clifton W. Ragsdale
Evolution of the Chordate Telencephalon.
Curr Biol, 29(13) 647-662 (2019)

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Peter Gross, K Vijay Kumar, Nathan Goehring, Justin Bois, Carsten Hoege, Frank Jülicher, Stephan W. Grill
Guiding self-organized pattern formation in cell polarity establishment.
Nat Phys, 15(3) 293-300 (2019)

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Takashi Namba, Samir Vaid, Wieland Huttner
Primate neocortex development and evolution: Conserved versus evolved folding.
J Comp Neurol, 527(10) 1621-1632 (2019)

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Mattias Hogvall, Bruno C Vellutini, José M Martín-Durán, Andreas Hejnol, Graham E Budd, Ralf Janssen
Embryonic expression of priapulid Wnt genes.
Dev Genes Evol, 229(4) 125-135 (2019)

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Laia Leria, Miquel Vila-Farré, Eduard Solà, Marta Riutort
Outstanding intraindividual genetic diversity in fissiparous planarians (Dugesia, Platyhelminthes) with facultative sex.
BMC Evol Biol, 19(1) Art. No. 130 (2019)

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Hernán Morales-Navarrete, Hidenori Nonaka, André Scholich, Fabián Segovia-Miranda, Walter de Back, Kirstin Meyer, Roman L Bogorad, Victor Koteliansky, Lutz Brusch, Yannis Kalaidzidis, Frank Jülicher, Benjamin Friedrich, Marino Zerial
Liquid-crystal organization of liver tissue.
Elife, 8 Art. No. e44860 (2019)

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Titus Franzmann, Simon Alberti
Protein Phase Separation as a Stress Survival Strategy.
Cold Spring Harb Perspect Biol, 11(6) Art. No. a034058 (2019)

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Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry, Pavel Tomancak
Analysis of Actomyosin Dynamics at Local Cellular and Tissue Scales Using Time-lapse Movies of Cultured Drosophila Egg Chambers.
J Vis Exp, 148 Art. No. e58587 (2019)

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Rana Amini, Anastasia Labudina, Caren Norden
Stochastic single cell migration leads to robust horizontal cell layer formation in the vertebrate retina.
Development, 146(12) Art. No. dev173450 (2019)

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Titus Franzmann, Simon Alberti
Prion-like low-complexity sequences: Key regulators of protein solubility and phase behavior.
J Biol Chem, 294(18) 7128-7136 (2019)

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Yaser Atlasi, Wout Megchelenbrink, Tianran Peng, Ehsan Habibi, Onkar Joshi, Shuang-Yin Wang, Cheng Wang, Colin Logie, Ina Poser, Hendrik Marks, Hendrik G Stunnenberg
Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency.
Nat Cell Biol, 21(5) 568-578 (2019)

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Milos Kostic, Judith Paridaen, Katherine S. Long, Nereo Kalebic, Barbara Langen, Nannette Grübling, Pauline Wimberger, Hiroshi Kawasaki, Takashi Namba, Wieland Huttner
YAP Activity Is Necessary and Sufficient for Basal Progenitor Abundance and Proliferation in the Developing Neocortex.
Cell Rep, 27(4) 1103-1118 (2019)

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Satu Kujawski, Mahendra Sonawane, Elisabeth Knust
penner/lgl2 is required for the integrity of the photoreceptor layer in the zebrafish retina.
Biol Open, 8(4) Art. No. bio041830 (2019)

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Nereo Kalebic, Carlotta Gilardi, Barbara Stepien, Michaela Wilsch-Bräuninger, Katherine S. Long, Takashi Namba, Marta Florio, Barbara Langen, Benoit Lombardot, Anna Shevchenko, Manfred W Kilimann, Hiroshi Kawasaki, Pauline Wimberger, Wieland Huttner
Neocortical Expansion Due to Increased Proliferation of Basal Progenitors Is Linked to Changes in Their Morphology.
Cell Stem Cell, 24(4) 535-550 (2019)

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Barbara Stepien, Wieland Huttner
Transport, Metabolism, and Function of Thyroid Hormones in the Developing Mammalian Brain.
Front Endocrinol (Lausanne), 10 Art. No. 209 (2019)

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German Tischler-Höhle
Haplotype and repeat separation in long reads.
In: Computational Intelligence Methods for Bioinformatics and Biostatistics : 14th International Meeting, CIBB 2017, Cagliari, Italy, September 7-9, 2017, Revised Selected Papers (2019)(Eds.) Massimo Bartoletti (Lecture Notes in Computer Science ;10834), Cham, Springer International Publishing (2019), 103-114

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Lara Marrone, Hannes C A Drexler, Jie Wang, Priyanka Tripathi, Tania Distler, Patrick Heisterkamp, Eric D Anderson, Sukhleen Kour, Anastasia Moraiti, Shovamayee Maharana, Rajat Bhatnagar, T Grant Belgard, Vadreenath Tripathy, Norman Kalmbach, Zohreh Hosseinzadeh, Valeria Crippa, Masin Abo-Rady, Florian Wegner, Angelo Poletti, Dirk Troost, Eleonora Aronica, Volker Busskamp, Joachim Weis, Udai Pandey, Anthony Hyman, Simon Alberti, Anand Goswami, Jared Sterneckert
FUS pathology in ALS is linked to alterations in multiple ALS-associated proteins and rescued by drugs stimulating autophagy.
Acta Neuropathol., 138(1) 67-84 (2019)

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Stefan Münster, Akanksha Jain, Alexander Mietke, Anastasios Pavlopoulos, Stephan W. Grill, Pavel Tomancak
Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.
Nature, 568(7752) 395-399 (2019)

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Benjamin Schmid, Philipp Tripal, Tina Fraaß, Christina Kersten, Barbara Ruder, Anika Grüneboom, Jan Huisken, Ralf Palmisano
3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax.
Nat Methods, 16(4) 278-280 (2019)

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Regis P. Lemaitre, Aliona Bogdanova, Barbara Borgonovo, Jeffrey Woodruff, David N. Drechsel
FlexiBAC: a versatile, open-source baculovirus vector system for protein expression, secretion, and proteolytic processing.
BMC Biotechnol., 19(1) Art. No. 20 (2019)

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Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken
Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish.
Development, 146(6) Art. No. dev173757 (2019)

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Sina Wittmann, Simon Alberti
ERα condensates: chronic stimulation is hard to ignore.
Nat Struct Mol Biol, 26(3) 153-154 (2019)

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Livia Goto-Silva, Marisa P. McShane, Sara Salinas, Yannis Kalaidzidis, Giampietro Schiavo, Marino Zerial
Retrograde transport of Akt by a neuronal Rab5-APPL1 endosome.
Sci Rep, 9(1) Art. No. 2433 (2019)

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Nikolai Hecker, Virag Sharma, Michael Hiller
Convergent gene losses illuminate metabolic and physiological changes in herbivores and carnivores.
Proc Natl Acad Sci U.S.A., 116(8) 3036-3041 (2019)

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K Venkatesan Iyer, Romina Piscitello-Gómez, Joris Paijmans, Frank Jülicher, Suzanne Eaton
Epithelial Viscoelasticity Is Regulated by Mechanosensitive E-cadherin Turnover.
Curr Biol, 29(4) 578-591 (2019)

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Ivan Ivanov, Rafael B. Lira, T-Y Dora Tang, Titus Franzmann, Adam Klosin, Lucas Caire da Silva, Anthony Hyman, Katharina Landfester, Reinhard Lipowsky, Kai Sundmacher, Rumiana Dimova
Directed Growth of Biomimetic Microcompartments.
Adv. Biosys., 3(6) Art. No. 1800314 (2019)

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Frida W Lindberg, Till Korten, Anette Löfstrand, Mohammad A Rahman, Mariusz Graczyk, Alf Mansson, Heiner Linke, Ivan Maximov
Design and development of nanoimprint-enabled structures for molecular motor devices
Mater. Res. Express, 6(2) Art. No. 025057 (2019)

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Katherine S. Long, Wieland Huttner
How the extracellular matrix shapes neural development.
Open Biol, 9(1) Art. No. 180216 (2019)

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Dimitrios Papadopoulos, Kassiani Skouloudaki, Ylva Engström, Lars Terenius, Rudolf Rigler, Christoph Zechner, Vladana Vukojević, Pavel Tomancak
Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch.
Development, 146(12) Art. No. dev168179 (2019)

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Mark S Springer, Christopher A Emerling, John Gatesy, Jason Randall, Matthew A Collin, Nikolai Hecker, Michael Hiller, Frédéric Delsuc
Odontogenic ameloblast-associated (ODAM) is inactivated in toothless/enamelless placental mammals and toothed whales.
BMC Evol Biol, 19(1) Art. No. 31 (2019)

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Kassiani Skouloudaki, Dimitrios Papadopoulos, Pavel Tomancak, Elisabeth Knust
The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation.
PLoS Genet, 15(1) Art. No. e1007852 (2019)

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Andrei Rozanski, HongKee Moon, Holger Brandl, José M Martín-Durán, Markus Grohme, Katja Hüttner, Kerstin Bartscherer, Ian Henry, Jochen Rink
PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity.
Nucleic Acids Res, 47(D1) 812-820 (2019)

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Egon Deyaert, Margaux Leemans, Ranjan Kumar Singh, Rodrigo Gallardo, Jan Steyaert, Arjan Kortholt, Janelle Lauer, Wim Versées
Structure and nucleotide-induced conformational dynamics of the Chlorobium tepidum Roco protein.
Biochem J, 476(1) 51-66 (2019)

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Albert Thommen, Steffen Werner, Olga Frank, Jenny Philipp, Oskar Knittelfelder, Yihui Quek, Karim Fahmy, Andrej Shevchenko, Benjamin Friedrich, Frank Jülicher, Jochen Rink
Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians.
Elife, 8 Art. No. e38187 (2019)

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Joan Sim, Kathleen Amy Osborne, Irene Argudo García, Artur Matysik, Rachel Kraut
The BEACH Domain Is Critical for Blue Cheese Function in a Spatial and Epistatic Autophagy Hierarchy.
Front Cell Dev Biol, 7 Art. No. 129 (2019)

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Johannes Girstmair, Maximilian J Telford
Reinvestigating the early embryogenesis in the flatworm Maritigrella crozieri highlights the unique spiral cleavage program found in polyclad flatworms.
Evodevo, 10 Art. No. 12 (2019)

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Jan Fischer, Michael Heide, Wieland Huttner
Genetic Modification of Brain Organoids.
Front Cell Neurosci, 13 Art. No. 558 (2019)

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Steven D. Briscoe
Field Homology: Still a Meaningless Concept.
Brain Behav. Evol., 93(1) 1-3 (2019)

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Sarita Hebbar, Elisabeth Knust, Guillaume Thibault, Rachel Kraut
Editorial: Connections to Membrane Trafficking Where You Least Expect Them: Diseases, Dynamics, Diet and Distance.
Front Cell Dev Biol, 7 Art. No. 327 (2019)

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Malte Lehmann, Elisabeth Knust, Sarita Hebbar
Drosophila melanogaster: A Valuable Genetic Model Organism to Elucidate the Biology of Retinitis Pigmentosa.
Methods Mol Biol, 1834 221-249 (2019)

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Anna Castells-Nobau, Ilse Eidhof, Michaela Fenckova, Dova B Brenman-Suttner, Jolanda M Scheffer-de Gooyert, Sheren Christine, Rosa L Schellevis, Kiran van der Laan, Christine Quentin, Lisa van Ninhuijs, Falko Hofmann, Radoslaw K Ejsmont, Simon E Fisher, Jamie M Kramer, Stephan J Sigrist, Anne F Simon, Annette Schenck
Conserved regulation of neurodevelopmental processes and behavior by FoxP in Drosophila.
PLoS ONE, 14(2) Art. No. e211652 (2019)

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Virag Sharma, Michael Hiller
Coding Exon-Structure Aware Realigner (CESAR): Utilizing Genome Alignments for Comparative Gene Annotation.
Methods Mol Biol, 1962 179-191 (2019)

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Rachel Kraut, Elisabeth Knust
Changes in endolysosomal organization define a pre-degenerative state in the crumbs mutant Drosophila retina.
PLoS ONE, 14(12) Art. No. e220220 (2019)

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Martin Stöter, Antje Janosch, Rico Barsacchi, Marc Bickle
CellProfiler and KNIME: Open-Source Tools for High-Content Screening.
Methods Mol Biol, 1953 43-60 (2019)

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Makoto Saito, Daniel Hess, Jan Eglinger, Anatol Fritsch, Moritz Kreysing, Brian Weinert, Chunaram Choudhary, Patrick Matthias
Acetylation of intrinsically disordered regions regulates phase separation.
Nat Chem Biol, 15(1) 51-61 (2019)

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Mette Handberg-Thorsager, V Ulman, Pavel Tomançak, Detlev Arendt, M Schubert
A Behavioral Assay to Study Effects of Retinoid Pharmacology on Nervous System Development in a Marine Annelid.
Methods Mol Biol, 2019 193-207 (2019)

2018

Louise Jawerth, Mahdiye Ijavi, Martine Ruer, Shambaditya Saha, Marcus Jahnel, Anthony A. Hyman, Frank Jülicher, Elisabeth Fischer-Friedrich
Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps.
Phys Rev Lett, 121(25) Art. No. 258101 (2018)

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Juliana G. Roscito, Katrin Sameith, Martin Pippel, Kees-Jan Francoijs, Sylke Winkler, Andreas Dahl, Georg Papoutsoglou, Gene Myers, Michael Hiller
The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly.
GigaScience, 7(12) Art. No. giy141 (2018)

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Björn Langer, Juliana G. Roscito, Michael Hiller
REforge Associates Transcription Factor Binding Site Divergence in Regulatory Elements with Phenotypic Differences between Species.
Mol Biol Evol, 35(12) 3027-3040 (2018)

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Virag Sharma, Michael Hiller
Loss of Enzymes in the Bile Acid Synthesis Pathway Explains Differences in Bile Composition among Mammals.
Genome Biol Evol, 10(12) 3211-3217 (2018)

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Martin Weigert, Uwe Schmidt, Tobias Boothe, Andreas Müller, Alexandr Dibrov, Akanksha Jain, Benjamin Wilhelm, Deborah Schmidt, Coleman Broaddus, Sian Culley, Mauricio Rocha-Martins, Fabián Segovia-Miranda, Caren Norden, Ricardo Henriques, Marino Zerial, Michele Solimena, Jochen Rink, Pavel Tomancak, Loic Royer, Florian Jug, Eugene W Myers
Content-aware image restoration: pushing the limits of fluorescence microscopy.
Nat Methods, 15(12) 1090-1097 (2018)

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Nereo Kalebic, Carlotta Gilardi, Mareike Albert, Takashi Namba, Katherine S. Long, Milos Kostic, Barbara Langen, Wieland Huttner
Human-specific ARHGAP11B induces hallmarks of neocortical expansion in developing ferret neocortex.
Elife, 7 Art. No. e41241 (2018)

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Frederic Berndt, Gopi Shah, Rory M Power, Jan Brugués, Jan Huisken
Dynamic and non-contact 3D sample rotation for microscopy.
Nat Commun, 9(1) Art. No. 5025 (2018)

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Juliana G. Roscito, Katrin Sameith, Genis Parra, Bjoern Langer, Andreas Petzold, Claudia Moebius, Marc Bickle, Miguel Trefaut Rodrigues, Michael Hiller
Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution.
Nat Commun, 9(1) Art. No. 4737 (2018)

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Liyuan Sui, Silvanus Alt, Martin Weigert, Natalie Dye, Suzanne Eaton, Florian Jug, Eugene W Myers, Frank Jülicher, Guillaume Salbreux, Christian Dahmann
Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms.
Nat Commun, 9(1) Art. No. 4620 (2018)

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Michael Hecht, Ivo F. Sbalzarini
Fast interpolation and Fourier transform in high-dimensional spaces
In: Intelligent Computing : Proceedings of the 2018 IEEE Computing Conference, Vol. 2 (2018)(Eds.) Kohei Arai Advances in Intelligent Systems and Computing ; 857, Cham, Springer International Publishing (2018), 53-75

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Simon Alberti, Shambaditya Saha, Jeffrey Woodruff, Titus Franzmann, Jie Wang, Anthony Hyman
A User's Guide for Phase Separation Assays with Purified Proteins.
J Mol Biol, 430(23) 4806-4820 (2018)

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Mareike A Jordan, Dennis R Diener, Ludek Stepanek, Gaia Pigino
The cryo-EM structure of intraflagellar transport trains reveals how dynein is inactivated to ensure unidirectional anterograde movement in cilia.
Nat Cell Biol, 20(11) 1250-1255 (2018)

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Sundar Ram Naganathan, Sebastian Fürthauer, Josana Rodriguez, Bruno Thomas Fievet, Frank Jülicher, Julie Ahringer, Carlo Vittorio Cannistraci, Stephan W. Grill
Morphogenetic degeneracies in the actomyosin cortex.
Elife, 7 Art. No. e37677 (2018)

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Samir Vaid, J Gray Camp, Lena Hersemann, Christina Eugster Oegema, Anne-Kristin Heninger, Sylke Winkler, Holger Brandl, Mihail Sarov, Barbara Treutlein, Wieland Huttner, Takashi Namba
A novel population of Hopx-dependent basal radial glial cells in the developing mouse neocortex.
Development, 145(20) Art. No. dev169276 (2018)

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David Jebb, Michael Hiller
Recurrent loss of HMGCS2 shows that ketogenesis is not essential for the evolution of large mammalian brains.
Elife, 7 Art. No. e38906 (2018)

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Steven D. Briscoe, Clifton W. Ragsdale
Homology, neocortex, and the evolution of developmental mechanisms.
Science, 362(6411) 190-193 (2018)

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Till Korten, Elena Tavkin, Lara Scharrel, Vandana Singh Kushwaha, Stefan Diez
An automated in vitro motility assay for high-throughput studies of molecular motors.
Lab on a chip, 18(20) 3196-3206 (2018)

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Uwe Schmidt, Martin Weigert, Coleman Broaddus, Gene Myers
Cell Detection with Star-Convex Polygons
In: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 : 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part II (2018)(Eds.) Alejandro F. Frangi Lecture Notes in Computer Science ; 11071, Cham, Springer International Publishing (2018), 265-273

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Marko Brankatschk, Theresia Gutmann, Oskar Knittelfelder, Alessandra Palladini, Elodie Prince, Michal Grzybek, Beate Brankatschk, Andrej Shevchenko, Ünal Coskun, Suzanne Eaton
A Temperature-Dependent Switch in Feeding Preference Improves Drosophila Development and Survival in the Cold
Dev Cell, 46(6) 781-793 (2018)

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Maria Kotini, Elias H Barriga, Jonathan Leslie, Marc Gentzel, Verena Rauschenberger, Alexandra Schambon, Roberto Mayor
Gap junction protein Connexin-43 is a direct transcriptional regulator of N-cadherin in vivo.
Nat Commun, 9(1) Art. No. 3846 (2018)

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Felipe Mora-Bermudez, Wieland B. Huttner
Centrosomes in asymmetric cell division and neocortical development.
In: Encyclopedia of Life Sciences (eLS). (Eds.) Mauro Maccarrone,Chichester,John Wiley & Sons Ltd. (2018),1-9

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Christiane Rennert, Sebastian Vlaic, Eugenia Marbach-Breitrück, Carlo Thiel, Susanne Sales, Andrej Shevchenko, Rolf Gebhardt, Madlen Matz-Soja
The Diurnal Timing of Starvation Differently Impacts Murine Hepatic Gene Expression and Lipid Metabolism - A Systems Biology Analysis Using Self-Organizing Maps.
Front Physiol, 9 Art. No. 1180 (2018)

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Björn Drobot, Juan M Iglesias-Artola, Kristian Le Vay, Viktoria Mayr, Mrityunjoy Kar, Moritz Kreysing, Hannes Mutschler, T-Y Dora Tang
Compartmentalised RNA catalysis in membrane-free coacervate protocells.
Nat Commun, 9(1) Art. No. 3643 (2018)

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Katherine S. Long, Ben Newland, Marta Florio, Nereo Kalebic, Barbara Langen, Anna Kolterer, Pauline Wimberger, Wieland Huttner
Extracellular Matrix Components HAPLN1, Lumican, and Collagen I Cause Hyaluronic Acid-Dependent Folding of the Developing Human Neocortex.
Neuron, 99(4) 702-719 (2018)

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Oskar Knittelfelder, Sofia Traikov, Olga Vvedenskaya, Andrea Schuhmann, Sandra Segeletz, Anna Shevchenko, Andrej Shevchenko
Shotgun Lipidomics Combined with Laser Capture Microdissection: A Tool To Analyze Histological Zones in Cryosections of Tissues.
Anal Chem, 90(16) 9868-9878 (2018)

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Igor Peterlik, David Svoboda, Vladimir Ulman, Dmitry V. Sorokin, Martin Maska
Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia
In: Simulation and synthesis in medical imaging ; third international workshop, SASHIMI 2018, held in conjunction with MICCAI 2018, Granada, Spain, September 16, 2018 : proceedings (2018)(Eds.) Ali Gooya (Lecture notes in computer science ;11037), Cham, Springer International Publishing (2018), 71-79

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Edgar Boczek, Simon Alberti
Phase changes in neurotransmission.
Science, 361(6402) 548-549 (2018)

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Jie Wang, Jeong-Mo Choi, Alex S Holehouse, Hyun O. Lee, Xiaojie Zhang, Marcus Jahnel, Shovamayee Maharana, Regis P. Lemaitre, Andrei I. Pozniakovsky, David N. Drechsel, Ina Poser, Rohit V Pappu, Simon Alberti, Anthony Hyman
A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.
Cell, 174(3) 688-699 (2018)

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Michael Heide, Wieland B. Huttner, Felipe Mora-Bermúdez
Brain organoids as models to study human neocortex development and evolution.
Curr Opin Cell Biol, 55 8-16 (2018)

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Djamal Belazzougui, Fabio Cunial, Olgert Denas
Fast matching statistics in small space
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Rory M Power, Jan Huisken
Adaptable, illumination patterning light sheet microscopy.
Sci Rep, 8(1) Art. No. 9615 (2018)

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Sonja Kroschwald, Matthias Munder, Shovamayee Maharana, Titus Franzmann, Doris Richter, Martine Ruer, Anthony Hyman, Simon Alberti
Different Material States of Pub1 Condensates Define Distinct Modes of Stress Adaptation and Recovery.
Cell Rep, 23(11) 3327-3339 (2018)

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Anna Klemm, Agneza Bosilj, Matko Gluncˇic, Nenad Pavin, Iva M. Tolic
Metaphase kinetochore movements are regulated by kinesin-8 motors and microtubule dynamic instability.
Mol Biol Cell, 29(11) 1332-1345 (2018)

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Virag Sharma, Thomas Lehmann, Heiko Stuckas, Liane Funke, Michael Hiller
Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals.
PLoS Biol, 16(6) Art. No. e2005293 (2018)

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Mengfei Gao, Riccardo Maraspini, Oliver Beutel, Amin Zehtabian, Britta Eickholt, Alf Honigmann, Helge Ewers
Expansion Stimulated Emission Depletion Microscopy (ExSTED).
ACS Nano, 12(5) 4178-4185 (2018)

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Anastasia Felker, Karin D Prummel, Anne M Merks, Michaela Mickoleit, Eline C Brombacher, Jan Huisken, Daniela Panáková, Christian Mosimann
Continuous addition of progenitors forms the cardiac ventricle in zebrafish.
Nat Commun, 9(1) Art. No. 2001 (2018)

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David Oriola, Daniel Needleman, Jan Brugués
The Physics of the Metaphase Spindle.
Ann Rev Biophys, 47 655-673 (2018)

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Riccardo Maraspini, Oliver Beutel, Alf Honigmann
Circle scanning STED fluorescence correlation spectroscopy to quantify membrane dynamics and compartmentalization.
Methods, 140-141 188-197 (2018)

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Celina Galles, Gastón M Prez, Sider Penkov, Sebastian Boland, Exequiel O J Porta, Silvia G Altabe, Guillermo R Labadie, Ulrike Schmidt, Hans-Joachim Knölker, Teymuras V. Kurzchalia, Diego Mendoza
Endocannabinoids in Caenorhabditis elegans are essential for the mobilization of cholesterol from internal reserves.
Sci Rep, 8(1) Art. No. 6398 (2018)

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Shovamayee Maharana, Jie Wang, Dimitrios Papadopoulos, Doris Richter, Andrei I. Pozniakovsky, Ina Poser, Marc Bickle, Sandra Rizk, Jordina Guillén-Boixet, Titus Franzmann, Marcus Jahnel, Lara Marrone, Young-Tae Chang, Jared Sterneckert, Pavel Tomancak, Anthony Hyman, Simon Alberti
RNA buffers the phase separation behavior of prion-like RNA binding proteins.
Science, 360(6391) 918-921 (2018)

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Susanne Wegmann, Bahareh Eftekharzadeh, Katharina Tepper, Katarzyna M Zoltowska, Rachel E Bennett, Simon Dujardin, Pawel R Laskowski, Danny MacKenzie, Tarun Kamath, Caitlin Commins, Charles Vanderburg, Allyson D Roe, Zhanyun Fan, Amandine M Molliex, Amayra Hernandez-Vega, Daniel Muller, Anthony Hyman, Eckhard Mandelkow, J Paul Taylor, Bradley T Hyman
Tau protein liquid-liquid phase separation can initiate tau aggregation.
EMBO J, 37(7) Art. No. e98049 (2018)

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Edgar Boczek, Simon Alberti
One domain fits all: Using disordered regions to sequester misfolded proteins.
J Cell Biol, 217(4) 1173-1175 (2018)

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Carsten Wolff, Jean-Yves Tinevez, Tobias Pietzsch, Evangelia Stamataki, Benjamin Harich, Léo Guignard, Stephan Preibisch, Spencer Shorte, Patrick Keller, Pavel Tomancak, Anastasios Pavlopoulos
Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.
Elife, 7 Art. No. e34410 (2018)

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Stefania Tavano, Elena Taverna, Nereo Kalebic, Christiane Haffner, Takashi Namba, Andreas Dahl, Michaela Wilsch-Bräuninger, Judith Paridaen, Wieland B. Huttner
Insm1 Induces Neural Progenitor Delamination in Developing Neocortex via Downregulation of the Adherens Junction Belt-Specific Protein Plekha7.
Neuron, 97(6) 1299-1314 (2018)

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Marta Florio, Michael Heide, Anneline Pinson, Holger Brandl, Mareike Albert, Sylke Winkler, Pauline Wimberger, Wieland B. Huttner, Michael Hiller
Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex.
Elife, 7 Art. No. e32332 (2018)

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Pavel Vopalensky, Sabrina Pralow, Nadine Vastenhouw
Reduced expression of the Nodal co-receptor Oep causes loss of mesendodermal competence in zebrafish.
Development, 145(5) Art. No. dev158832 (2018)

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Giorgos Tsoumpekos, Linda Nemetschke, Elisabeth Knust
Drosophila Big bang regulates the apical cytocortex and wing growth through junctional tension.
J Cell Biol, 217(3) 1033-1045 (2018)

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Matthäus Mittasch, Peter Gross, Michael Nestler, Anatol W Fritsch, Christiane Iserman, Mrityunjoy Kar, Matthias Munder, Axel Voigt, Simon Alberti, Stephan W. Grill, Moritz Kreysing
Non-invasive perturbations of intracellular flow reveal physical principles of cell organization.
Nat Cell Biol, 20(3) 344-351 (2018)

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Patrick Rockenfeller, Martin Smolnig, Jutta Diessl, Mina Bashir, Vera Schmiedhofer, Oskar Knittelfelder, Julia Ring, Joakim Franz, Ines Foessl, M Khan, René Rost, Wolfgang F Graier, Guido Kroemer, Andreas Zimmermann, Didac Carmona-Gutierrez, Tobias Eisenberg, Sabrina Büttner, Stephan J Sigrist, Ronald P Kühnlein, Sepp D Kohlwein, Campbell W Gourlay, Frank Madeo
Diacylglycerol triggers Rim101 pathway-dependent necrosis in yeast: a model for lipotoxicity.
Cell Death Differ, 25(4) 765-781 (2018)

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Santosh Phuyal, Mayes Kasem, Oskar Knittelfelder, Animesh Sharma, Davi de Miranda Fonseca, Vaineta Vebraite, Sergey Shaposhnikov, Geir Slupphaug, Vidar Skaug, Shanbeh Zienolddiny
Characterization of the proteome and lipidome profiles of human lung cells after low dose and chronic exposure to multiwalled carbon nanotubes.
Nanotoxicology, 12(2) 138-152 (2018)

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FoSheng Hsu, Stephanie Spannl, Charles Ferguson, Anthony Hyman, Robert G. Parton, Marino Zerial
Rab5 and Alsin regulate stress-activated cytoprotective signaling on mitochondria.
Elife, 7 Art. No. e32282 (2018)

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Lara Marrone, Ina Poser, Ian Casci, Julia Japtok, Peter Reinhardt, Antje Janosch, Cordula Andree, Hyun-Ok Kate Lee, Claudia Moebius, Ellen Koerner, Lydia Reinhardt, Maria Elena Cicardi, Karl Hackmann, Barbara Klink, Angelo Poletti, Simon Alberti, Marc Bickle, Andreas Hermann, Udai Pandey, Anthony Hyman, Jared Sterneckert
Isogenic FUS-eGFP iPSC Reporter Lines Enable Quantification of FUS Stress Granule Pathology that Is Rescued by Drugs Inducing Autophagy.
Stem Cell Reports, 10(2) 375-389 (2018)

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J P Joos, A R Saadatmand, C Schnabel, Ivana Viktorinová, Thomas Brand, M Kramer, S Nattel, D Dobrev, Pavel Tomancak, J Backs, P Kleinbongard, G Heusch, K Lorenz, E Koch, S Weber, A El-Armouche
Ectopic expression of S28A-mutated Histone H3 modulates longevity, stress resistance and cardiac function in Drosophila.
Sci Rep, 8(1) Art. No. 2940 (2018)

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Ronald Sluys, Miquel Vila-Farré, Jochen Rink, John E. J. Rasko
An intriguing, new planarian species from Tasmania, with a discussion on protandry in triclad flatworms (Platyhelminthes, Tricladida)
Acta Zool, 99(4) 404-414 (2018)

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Markus Grohme, Siegfried Schloissnig, Andrei Rozanski, Martin Pippel, George Robert Young, Sylke Winkler, Holger Brandl, Ian Henry, Andreas Dahl, Sean Powell, Michael Hiller, Eugene Myers, Jochen Rink
The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms.
Nature, 554(7690) 56-61 (2018)

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Sergej Nowoshilow, Siegfried Schloissnig, Jifeng Fei, Andreas Dahl, Andy W C Pang, Martin Pippel, Sylke Winkler, Alex R Hastie, George Young, Juliana G. Roscito, Francisco Falcon, Dunja Knapp, Sean Powell, Alfredo Cruz, Han Cao, Bianca Habermann, Michael Hiller, Elly M. Tanaka, Eugene W Myers
The axolotl genome and the evolution of key tissue formation regulators.
Nature, 554(7690) 50-55 (2018)

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Mukesh Kumar, Shai Joseph, Martina Augsburg, Aliona Bogdanova, David N. Drechsel, Nadine Vastenhouw, Frank Buchholz, Marc Gentzel, Andrej Shevchenko
MS Western, a Method of Multiplexed Absolute Protein Quantification is a Practical Alternative to Western Blotting.
Mol Cell Proteomics, 17(2) 384-396 (2018)

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Marcel Naumann, Arun Pal, Anand Goswami, Xenia Lojewski, Julia Japtok, Anne Vehlow, Maximilian Naujock, René Günther, Mengmeng Jin, Nancy Stanslowsky, Peter Reinhardt, Jared Sterneckert, Marie Frickenhaus, Francisco Pan-Montojo, Erik Storkebaum, Ina Poser, Axel Freischmidt, Jochen H Weishaupt, Karlheinz Holzmann, Dirk Troost, Albert C Ludolph, Tobias M Boeckers, Stefan Liebau, Susanne Petri, Nils Cordes, Anthony Hyman, Florian Wegner, Stephan W. Grill, Joachim Weis, Alexander Storch, Andreas Hermann
Impaired DNA damage response signaling by FUS-NLS mutations leads to neurodegeneration and FUS aggregate formation.
Nat Commun, 9(1) Art. No. 335 (2018)

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Rana Amini, Mauricio Rocha-Martins, Caren Norden
Neuronal Migration and Lamination in the Vertebrate Retina.
Front Neurosci, 11 Art. No. 742 (2018)

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Stephen Enos, Martin Dressler, Beatriz Ferreira Gomes, Anthony Hyman, Jeffrey Woodruff
Phosphatase PP2A and microtubule-mediated pulling forces disassemble centrosomes during mitotic exit.
Biol Open, 7(1) Art. No. 029777 (2018)

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Miquel Vila-Farré, Jochen Rink
The Ecology of Freshwater Planarians.
Methods Mol Biol, 1774 173-205 (2018)

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Markus Grohme, Miquel Vila-Farré, Jochen Rink
Small- and Large-Scale High Molecular Weight Genomic DNA Extraction from Planarians.
Methods Mol Biol, 1774 267-275 (2018)

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Titus Franzmann, Marcus Jahnel, Andrei I. Pozniakovsky, Julia Mahamid, Alex S Holehouse, Elisabeth Nüske, Doris Richter, Wolfgang Baumeister, Stephan W. Grill, Rohit V Pappu, Anthony A. Hyman, Simon Alberti
Phase separation of a yeast prion protein promotes cellular fitness.
Science, 359(6371) Art. No. eaao5654 (2018)

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Alejandro Vignoni, Anna Bajur, Elisabeth Knust, Ivo F. Sbalzarini
Multi-objective identification from fluorescence recovery after photobleaching experiments: Understanding morphogenetic regulation of epithelial polarity
IFAC-PapersOnLine, 51(19) 8-11 (2018)

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Mareike Albert, Wieland Huttner
Epigenetic and Transcriptional Pre-patterning-An Emerging Theme in Cortical Neurogenesis.
Front Neurosci, 12 Art. No. 359 (2018)

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L Carine Stapel, Coleman Broaddus, Nadine Vastenhouw
Detection and Automated Analysis of Single Transcripts at Subcellular Resolution in Zebrafish Embryos.
Methods Mol Biol, 1649 143-162 (2018)

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Olga Vvedenskaya, Yuting Wang, Jacobo Miranda Ackerman, Oskar Knittelfelder, Andrej Shevchenko
Analytical challenges in human plasma lipidomics: A winding path towards the truth
Trends Analyt Chem, Art. No. 115277 (2018)

2017

Michael Weber, Nico Scherf, Alexander M Meyer, Daniela Panáková, Peter Kohl, Jan Huisken
Cell-accurate optical mapping across the entire developing heart.
Elife, 6 Art. No. e28307 (2017)

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J M Wasielewska, L Grönnert, N Rund, L Donix, R Rust, Alex Sykes, A Hoppe, Axel Roers, Gerd Kempermann, T L Walker
Mast cells increase adult neural precursor proliferation and differentiation but this potential is not realized in vivo under physiological conditions.
Sci Rep, 7(1) Art. No. 17859 (2017)

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Virag Sharma, Peter Schwede, Michael Hiller
CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation.
Bioinformatics, 33(24) 3985-3987 (2017)

---
B Duygu Özpolat, Mette Handberg-Thorsager, Michel Vervoort, Guillaume Balavoine
Cell lineage and cell cycling analyses of the 4d micromere using live imaging in the marine annelid Platynereis dumerilii.
Elife, 6 Art. No. e30463 (2017)

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Michael Heide, Katherine Long, Wieland B. Huttner
Novel gene function and regulation in neocortex expansion.
Curr Opin Cell Biol, 49 22-30 (2017)

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Kai Schuhmann, Kristina Srzentić, Konstantin O Nagornov, Henrik Thomas, Theresia Gutmann, Ünal Coskun, Yury O Tsybin, Andrej Shevchenko
Monitoring Membrane Lipidome Turnover by Metabolic 15N Labeling and Shotgun Ultra-High-Resolution Orbitrap Fourier Transform Mass Spectrometry.
Anal Chem, 89(23) 12857-12865 (2017)

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Marcus Braun, Zdenek Lansky, Agata Szuba, Friedrich W Schwarz, Aniruddha Mitra, Mengfei Gao, Annemarie Lüdecke, Pieter Rein Ten Wolde, Stefan Diez
Changes in microtubule overlap length regulate kinesin-14-driven microtubule sliding.
Nat Chem Biol, 13(12) 1245-1252 (2017)

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Ivana Viktorinová, Ian Henry, Pavel Tomancak
Epithelial rotation is preceded by planar symmetry breaking of actomyosin and protects epithelial tissue from cell deformations.
PLoS Genet, 13(11) Art. No. 1007107 (2017)

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Birgit Plochberger, Clemens Röhrl, Johannes Preiner, Christian Rankl, Mario Brameshuber, Josef Madl, Robert Bittman, Robert Ros, Erdinc Sezgin, Christian Eggeling, Peter Hinterdorfer, Herbert Stangl, Gerhard J Schütz
HDL particles incorporate into lipid bilayers - a combined AFM and single molecule fluorescence microscopy study.
Sci Rep, 7(1) Art. No. 15886 (2017)

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Yusuke Toyoda, Cedric J Cattin, Martin P Stewart, Ina Poser, Mirko Theis, Teymuras V. Kurzchalia, Frank Buchholz, Anthony Hyman, Daniel J. Müller
Genome-scale single-cell mechanical phenotyping reveals disease-related genes involved in mitotic rounding.
Nat Commun, 8(1) Art. No. 1266 (2017)

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Nikolai Hecker, Virag Sharma, Michael Hiller
Transition to an Aquatic Habitat Permitted the Repeated Loss of the Pleiotropic KLK8 Gene in Mammals.
Genome Biol Evol, 9(11) 3179-3188 (2017)

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Jacob Kruse, Carsten Rother, Uwe Schmidt
Learning to Push the Limits of Efficient FFT-based Image Deconvolution
In: 2017 IEEE International Conference on Computer Vision : ICCV 2017 : proceedings : 22-29 October 2017, Venice, Italy (2017), Piscataway, N.J., IEEE (2017), 4596-4604

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Natalja Strelnikova, Nora Sauter, Manuel Guizar-Sicairos, Michael Göllner, Ana Diaz, Petrina Delivani, Mariola R. Chacón, Iva M Tolić, Vasily Zaburdaev, Thomas Pfohl
Live cell X-ray imaging of autophagic vacuoles formation and chromatin dynamics in fission yeast.
Sci Rep, 7(1) Art. No. 13775 (2017)

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Yadira Boada, Alejandro Vignoni, Jesús Picó
Engineered Control of Genetic Variability Reveals Interplay among Quorum Sensing, Feedback Regulation, and Biochemical Noise.
ACS Synth Biol, 6(10) 1903-1912 (2017)

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Natalie Dye, Marko Popović, Stephanie Spannl, Raphael Etournay, Dagmar Kainmüller, Suhrid Ghosh, Eugene W Myers, Frank Jülicher, Suzanne Eaton
Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc.
Development, 144(23) 4406-4421 (2017)

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Simone Pigolotti, Izaak Neri, Édgar Roldán, Frank Jülicher
Generic Properties of Stochastic Entropy Production.
Phys Rev Lett, 119(14) 140604-140604 (2017)

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Martin Weigert, Loic Royer, Florian Jug, Gene Myers
Isotropic reconstruction of 3D fluorescence microscopy images using convolutional neural networks
In: Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2017 : 20th International Conference, Quebec City, QC, Canada, September 10-14, 2017, Proceedings, Part II (2017)(Eds.) Maxime Descoteaux (Lecture Notes in Computer Science ; 10434), Cham, Springer International Publishing (2017), 126-134

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Cordula Reuther, Matthäus Mittasch, Sundar Naganathan, Stephan W. Grill, Stefan Diez
Highly-Efficient Guiding of Motile Microtubules on Non-Topographical Motor Patterns.
Nano Lett, 17(9) 5699-5705 (2017)

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Amayra Hernández-Vega, Marcus Braun, Lara Scharrel, Marcus Jahnel, Susanne Wegmann, Bradley T Hyman, Simon Alberti, Stefan Diez, Anthony Hyman
Local Nucleation of Microtubule Bundles through Tubulin Concentration into a Condensed Tau Phase.
Cell Rep, 20(10) 2304-2312 (2017)

---
Mareike Albert, Nereo Kalebic, Marta Florio, Naharajan Lakshmanaperumal, Christiane Haffner, Holger Brandl, Ian Henry, Wieland B. Huttner
Epigenome profiling and editing of neocortical progenitor cells during development.
EMBO J, 36(17) 2642-2658 (2017)

---
Sheik Pran Babu Sardar Pasha, Robert Münch, Patrick Schäfer, Peter Oertel, Alex Sykes, Yiqing Zhu, Mike Karl
Retinal cell death dependent reactive proliferative gliosis in the mouse retina.
Sci Rep, 7(1) Art. No. 9517 (2017)

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L Carine Stapel, Christoph Zechner, Nadine Vastenhouw
Uniform gene expression in embryos is achieved by temporal averaging of transcription noise.
Genes Dev, 31(16) 1635-1640 (2017)

---
Corinna Blasse, Stephan Saalfeld, Raphael Etournay, Andreas Sagner, Suzanne Eaton, Eugene W Myers
PreMosa: extracting 2D surfaces from 3D microscopy mosaics.
Bioinformatics, 33(16) 2563-2569 (2017)

---
Shambaditya Saha, Anthony Hyman
RNA gets in phase.
J Cell Biol, 216(8) 2235-2237 (2017)

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Tobias Boothe, Lennart Hilbert, Michael Heide, Lea Berninger, Wieland B. Huttner, Vasily Zaburdaev, Nadine Vastenhouw, Eugene W Myers, David N. Drechsel, Jochen Rink
A tunable refractive index matching medium for live imaging cells, tissues and model organisms.
Elife, 6 Art. No. e27240 (2017)

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Adam Klosin, Anthony Hyman
Molecular biology: A liquid reservoir for silent chromatin.
Nature, 547(7662) 168-170 (2017)

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Kai Schuhmann, Henrik Thomas, Jacobo Miranda Ackerman, Konstantin O Nagornov, Yury O Tsybin, Andrej Shevchenko
Intensity-Independent Noise Filtering in FT MS and FT MS/MS Spectra for Shotgun Lipidomics.
Anal Chem, 89(13) 7046-7052 (2017)

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Valentina Botti, François McNicoll, Michaela Steiner, Florian M Richter, Anfisa Solovyeva, Marius Wegener, Oliver D Schwich, Ina Poser, Kathi Zarnack, Ilka Wittig, Karla M. Neugebauer, Michaela Müller-McNicoll
Cellular differentiation state modulates the mRNA export activity of SR proteins.
J Cell Biol, 216(7) 1993-2009 (2017)

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Beata E Mierzwa, Nicolas Chiaruttini, Lorena Redondo-Morata, Joachim Moser von Filseck, Julia König, Jorge Larios, Ina Poser, Thomas Müller-Reichert, Simon Scheuring, Aurélien Roux, Daniel W Gerlich
Dynamic subunit turnover in ESCRT-III assemblies is regulated by Vps4 to mediate membrane remodelling during cytokinesis.
Nat Cell Biol, 19(7) 787-798 (2017)

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Virag Sharma, Michael Hiller
Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation.
Nucleic Acids Res, 45(14) 8369-8377 (2017)

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Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot
Flexible indexing of repetitive collections
In: Unveiling Dynamics and Complexity : 13th Conference on Computability in Europe, CiE 2017, Turku, Finland, June 12-16, 2017, Proceedings (2017)(Eds.) Jarkko Kari (Lecture Notes in Computer Science ; 10307), Cham, Springer International Publishing (2017), 162-174

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Verena Rauschenberger, Dominic B Bernkopf, Sabrina Krenn, Kowcee Jalal, Jens Heller, Jürgen Behrens, Marc Gentzel, Alexandra Schambony
The phosphatase Pgam5 antagonizes Wnt/β-Catenin signaling in embryonic anterior-posterior axis patterning.
Development, 144(12) 2234-2247 (2017)

---
Dmitrij Schlesinger, Florian Jug, Gene Myers, Carsten Rother, Dagmar Kainmueller
Crowd Sourcing Image Segmentation with iaSTAPLE
In: 14th. IEEE International Symposium on Biomedical Imaging: From Nano to Macro ; ISBI 2017 ; Proceedings (2017)(Eds.) Garry Egan, Piscataway, N.J., IEEE (2017), 401-405

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Patricia Heyn, Hanna Salmonowicz, Jonathan Rodenfels, Karla M. Neugebauer
Activation of transcription enforces the formation of distinct nuclear bodies in zebrafish embryos.
RNA Biol, 14(6) 752-760 (2017)

---
Carlos Ocaña-Morgner, Susanne Sales, Manuela Rothe, Andrej Shevchenko, Rolf Jessberger
Tolerogenic versus Immunogenic Lipidomic Profiles of CD11c(+) Immune Cells and Control of Immunogenic Dendritic Cell Ceramide Dynamics.
J Immunol, 198(11) 4360-4372 (2017)

---
Jeffrey Woodruff, Beatriz Ferreira Gomes, Per Widlund, Julia Mahamid, Alf Honigmann, Anthony Hyman
The Centrosome Is a Selective Condensate that Nucleates Microtubules by Concentrating Tubulin.
Cell, 169(6) 1066-1077 (2017)

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Sebastian Boland, Ulrike Schmidt, Vyacheslav Zagoriy, Julio Sampaio, Raphael F Fritsche, Regina Czerwonka, Tilo Lübken, Jakob Reimann, Sider Penkov, Hans-Joachim Knölker, Teymuras V. Kurzchalia
Phosphorylated glycosphingolipids essential for cholesterol mobilization in Caenorhabditis elegans.
Nat Chem Biol, 13(6) 647-654 (2017)

---
Peter Gross, K Vijay Kumar, Stephan W. Grill
How Active Mechanics and Regulatory Biochemistry Combine to Form Patterns in Development.
Ann Rev Biophys, 46 337-356 (2017)

---
Avinash Patel, Liliana Malinovska, Shambaditya Saha, Jie Wang, Simon Alberti, Yamuna Krishnan, Anthony Hyman
ATP as a biological hydrotrope.
Science, 356(6339) 753-756 (2017)

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Mesut Bilgin, Andrej Shevchenko
Quantification of endogenous endocannabinoids by LC-MS/MS
In: Lipidomics. (Eds.) Paul Wood (Neuromethods ; 125).,New York,Springer (2017),99-107 Ch. 7

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Salman F Banani, Hyun-Ok Kate Lee, Anthony Hyman, Michael K Rosen
Biomolecular condensates: organizers of cellular biochemistry.
Nat Rev Mol Cell Biol, 18(5) 285-298 (2017)

---
Shai Joseph, Máté Pálfy, Lennart Hilbert, Mukesh Kumar, Jens Karschau, Vasily Zaburdaev, Andrej Shevchenko, Nadine Vastenhouw
Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos.
Elife, 6 Art. No. e23326 (2017)

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Daniel Mateju, Titus Franzmann, Avinash Patel, Andrii Kopach, Edgar Boczek, Shovamayee Maharana, Hyun-Ok Kate Lee, Serena Carra, Anthony Hyman, Simon Alberti
An aberrant phase transition of stress granules triggered by misfolded protein and prevented by chaperone function.
EMBO J, 36(12) 1669-1687 (2017)

---
John J Reynolds, Louise S Bicknell, Paula Carroll, Martin R Higgs, Ranad Shaheen, Jennie E Murray, Dimitrios Papadopoulos, Andrea Leitch, Olga Murina, Žygimantė Tarnauskaitė, Sarah R Wessel, Anastasia Zlatanou, Audrey Vernet, Alex von Kriegsheim, Rachel M A Mottram, Clare V Logan, Hannah Bye, Yun Li, Alexander Brean, Sateesh Maddirevula, Rachel C Challis, Kassiani Skouloudaki, Agaadir Almoisheer, Hessa S Alsaif, Ariella Amar, Natalie J Prescott, Michael B Bober, Angela Duker, Eissa Faqeih, Mohammed Zain Seidahmed, Saeed Al Tala, Abdulrahman Alswaid, Saleem Ahmed, Jumana Yousuf Al-Aama, Janine Altmüller, Mohammed Al Balwi, Angela F Brady, Luciana Chessa, Helen Cox, Rita Fischetto, Raoul Heller, Bertram D Henderson, Emma Hobson, Peter Nürnberg, E Ferda Percin, Angela Peron, Luigina Spaccini, Alan J Quigley, Seema Thakur, Carol A Wise, Grace Yoon, Maha Alnemer, Pavel Tomancak, Gökhan Yigit, A Malcolm R Taylor, Martin A M Reijns, Michael A Simpson, David Cortez, Fowzan Sami Alkuraya, Christopher G Mathew, Andrew P Jackson, Grant S Stewart
Mutations in DONSON disrupt replication fork stability and cause microcephalic dwarfism.
Nat Genet, 49(4) 537-549 (2017)

---
Rory M Power, Jan Huisken
A guide to light-sheet fluorescence microscopy for multiscale imaging.
Nat Methods, 14(4) 360-373 (2017)

---
Ines Wagner, Heng Wang, Philipp M Weissert, Werner L Straube, Anna Shevchenko, Marc Gentzel, Goncalo Brito, Akira Tazaki, Catarina Oliveira, Takuji Sugiura, Andrej Shevchenko, András Simon, David N. Drechsel, Elly M. Tanaka
Serum Proteases Potentiate BMP-Induced Cell Cycle Re-entry of Dedifferentiating Muscle Cells during Newt Limb Regeneration.
Dev Cell, 40(6) 608-617 (2017)

---
Kirstin Meyer, Oleksandr Ostrenko, George Bourantas, Hernán Morales-Navarrete, Natalie Porat-Shliom, Fabián Segovia-Miranda, Hidenori Nonaka, Ali Ghaemi, Jean-Marc Verbavatz, Lutz Brusch, Ivo F. Sbalzarini, Yannis Kalaidzidis, Roberto Weigert, Marino Zerial
A Predictive 3D Multi-Scale Model of Biliary Fluid Dynamics in the Liver Lobule.
Cell Syst, 4(3) 277-290 (2017)

---
Jarno Alanko, Fabio Cunial, Djamal Belazzougui, Veli Mäkinen
A framework for space-efficient read clustering in metagenomic samples.
BMC Bioinformatics, 18(Suppl 3) Art. No. 59 (2017)

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Sara Ciucci, Yan Ge, Claudio Durán, Alessandra Palladini, Víctor Jiménez-Jiménez, Luisa María Martínez-Sánchez, Yuting Wang, Susanne Sales, Andrej Shevchenko, Steven W Poser, Maik Herbig, Oliver Otto, Andreas Androutsellis-Theotokis, Jochen Guck, Mathias J. Gerl, Carlo Vittorio Cannistraci
Enlightening discriminative network functional modules behind Principal Component Analysis separation in differential-omic science studies.
Sci Rep, 7 Art. No. 43946 (2017)

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Matthias Merkel, Raphael Etournay, Marko Popović, Guillaume Salbreux, Suzanne Eaton, Frank Jülicher
Triangles bridge the scales: Quantifying cellular contributions to tissue deformation.
Phys Rev E, 95(3) Art. No. 032401 (2017)

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Ana Lisica, Stephan W. Grill
Optical tweezers studies of transcription by eukaryotic RNA polymerases.
Biomol Concepts, 8(1) 1-11 (2017)

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Marko Popović, Amitabha Nandi, Matthias Merkel, Raphael Etournay, Suzanne Eaton, Frank Jülicher, Guillaume Salbreux
Active dynamics of tissue shear flow
New J Phys, 19(3) Art. No. 033006 (2017)

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Izaak Neri, Édgar Roldán, Frank Jülicher
Statistics of Infima and Stopping Times of Entropy Production and Applications to Active Molecular Processes
Physical Review X, 7(1) Art. No. 011019 (2017)

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Stephanie Spannl, Alexandra Kumichel, Sarita Hebbar, Katja Kapp, Marcos Gonzalez-Gaitan, Sylke Winkler, Rosana Blawid, Gregor Jessberger, Elisabeth Knust
The Crumbs_C isoform of Drosophila shows tissue- and stage-specific expression and prevents light-dependent retinal degeneration.
Biol Open, 6(2) 165-175 (2017)

---
Tom Stückemann, James Cleland, Steffen Werner, Hanh Thi-Kim Vu, Robert Bayersdorf, Shang-Yun Liu, Benjamin Friedrich, Frank Jülicher, Jochen Rink
Antagonistic Self-Organizing Patterning Systems Control Maintenance and Regeneration of the Anteroposterior Axis in Planarians.
Dev Cell, 40(3) 248-263 (2017)

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Steffen Werner, Hanh Thi-Kim Vu, Jochen Rink
Self-organization in development, regeneration and organoids.
Curr Opin Cell Biol, 44 102-109 (2017)

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Takashi Namba, Wieland B. Huttner
Neural progenitor cells and their role in the development and evolutionary expansion of the neocortex.
Wiley Interdiscip Rev Dev Biol, 6(1) Art. No. e256 (2017)

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Marta Florio, Víctor Borrell, Wieland B. Huttner
Human-specific genomic signatures of neocortical expansion.
Curr Opin Neurobiol, 42 33-44 (2017)

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Masatoshi Nishikawa, Sundar Naganathan, Frank Jülicher, Stephan W. Grill
Controlling contractile instabilities in the actomyosin cortex.
Elife, 6 Art. No. e19595 (2017)

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Marie Skogs, Charlotte Stadler, Rutger Schutten, Martin Hjelmare, Christian Gnann, Lars Björk, Ina Poser, Anthony Hyman, Mathias Uhlén, Emma Lundberg
Antibody Validation in Bioimaging Applications Based on Endogenous Expression of Tagged Proteins.
J Proteome Res, 16(1) 147-155 (2017)

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Stefania Tavano, Wieland B. Huttner
The Cell Biology of Neural Stem and Progenitor Cells and Neocortex Expansion in Development and Evolution
In: Essentials of noncoding RNA in neuroscience : ontogenetics, plasticity of the vertebrate brain. (Eds.) Davide De Pietri Tonelli,Amsterdam, Netherlands,Academic Press (2017),81-99

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Andreas Ettinger, Yoichi Kosodo, Wieland B. Huttner
Specific membrane dynamics during neural stem cell division.
Methods Cell Biol, 137 143-172 (2017)

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Robert Bensch, Nico Scherf, Jan Huisken, Thomas Brox, Olaf Ronneberger
Spatiotemporal Deformable Prototypes for Motion Anomaly Detection
Int J Comput Vis, 122(3) 502-523 (2017)

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Patricia Heyn, Karla M. Neugebauer
Purification of Zygotically Transcribed RNA through Metabolic Labeling of Early Zebrafish Embryos.
Methods Mol Biol, 1605 121-131 (2017)

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Susanne Sales, Oskar Knittelfelder, Andrej Shevchenko
Lipidomics of Human Blood Plasma by High-Resolution Shotgun Mass Spectrometry.
Methods Mol Biol, 1619 203-212 (2017)

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Katrin Sameith, Juliana G. Roscito, Michael Hiller
Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly.
Brief Bioinform, 18(1) 1-8 (2017)

---
Anja Zeigerer, Anne Wuttke, Giovanni Marsico, Sarah Seifert, Yannis Kalaidzidis, Marino Zerial
Functional properties of hepatocytes in vitro are correlated with cell polarity maintenance.
Exp Cell Res, 350(1) 242-252 (2017)

2016

Yadira Boada, Alejandro Vignoni, Gilberto Reynoso-Meza, Jesús Picó
Parameter identification in synthetic biological circuits using multi-objective optimization
IFAC-PapersOnLine, 49(26) 77-82 (2016)

---
Georgi Stoychev, Cordula Reuther, Stefan Diez, Leonid Ionov
Controlled Retention and Release of Biomolecular Transport Systems Using Shape-Changing Polymer Bilayers.
Angew Chem Int Ed Engl, 55(52) 16106-16109 (2016)

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Marcus Braun, Stefan Diez, Zdenek Lansky
Cell Biology: Kinesin-14 Backsteps to Organize Polymerizing Microtubules.
Curr Biol, 26(24) 1292-1294 (2016)

---
Enric Picó-Marco, Yadira Boada, Jesús Picó, Alejandro Vignoni
Contractivity of a genetic circuit with internal feedback and cell-to-cell communication
IFAC-PapersOnLine, 49(26) 213-218 (2016)

---
Marta Florio, Takashi Namba, Svante Pääbo, Michael Hiller, Wieland B. Huttner
A single splice site mutation in human-specific ARHGAP11B causes basal progenitor amplification
Sci Adv, 2(12) Art. No. e1601941 (2016)

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Ilaria Visco, Carsten Hoege, Anthony Hyman, Petra Schwille
In vitro Reconstitution of a Membrane Switch Mechanism for the Polarity Protein LGL.
J Mol Biol, 428(24 Pt A) 4828-4842 (2016)

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Liliana Malinovska, Simon Alberti
Studying the Protein Quality Control System of D. discoideum Using Temperature-controlled Live Cell Imaging.
J Vis Exp, (118) Art. No. e54730 (2016)

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Linda Nemetschke, Elisabeth Knust
Drosophila Crumbs prevents ectopic Notch activation in developing wings by inhibiting ligand-independent endocytosis.
Development, 143(23) 4543-4553 (2016)

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Loic Royer, William Lemon, Raghav K Chhetri, Yinan Wan, Michael Coleman, Eugene W Myers, Patrick Keller
Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.
Nat Biotechnol, 34(12) 1267-1278 (2016)

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Izaak Neri, Fernando Lucas Metz
Eigenvalue Outliers of Non-Hermitian Random Matrices with a Local Tree Structure.
Phys Rev Lett, 117(22) Art. No. 224101 (2016)

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Cordula Reuther, Alejandra Laguillo Diego, Stefan Diez
Kinesin-1 motors can increase the lifetime of taxol-stabilized microtubules.
Nat Nanotechnol, 11(11) 914-915 (2016)

---
Mariola R. Chacón, Petrina Delivani, Iva M Tolić
Meiotic Nuclear Oscillations Are Necessary to Avoid Excessive Chromosome Associations.
Cell Rep, 17(6) 1632-1645 (2016)

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Jacques Pécréaux, Stefanie Redemann, Zahraa Alayan, Benjamin Mercat, Sylvain Pastezeur, Carlos Garzon-Coral, Anthony Hyman, Jonathon Howard
The Mitotic Spindle in the One-Cell C. elegans Embryo Is Positioned with High Precision and Stability.
Biophys J, 111(8) 1773-1784 (2016)

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Oliver Wueseke, David Zwicker, Anne Schwager, Yao Liang Wong, Karen Oegema, Frank Jülicher, Anthony Hyman, Jeffrey Woodruff
Polo-like kinase phosphorylation determines Caenorhabditis elegans centrosome size and density by biasing SPD-5 toward an assembly-competent conformation.
Biol Open, 5(10) 1431-1440 (2016)

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S Kopprasch, Srirangan Dheban, Kai Schuhmann, Aimin Xu, K-M Schulte, Charmaine J Simeonovic, Peter E H Schwarz, Stefan Bornstein, Andrej Shevchenko, Juergen Graessler
Detection of Independent Associations of Plasma Lipidomic Parameters with Insulin Sensitivity Indices Using Data Mining Methodology.
PLoS ONE, 11(10) Art. No. e0164173 (2016)

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Guruchandar Arulmozhivarman, Martin Stöter, Marc Bickle, Martin Kräter, Manja Wobus, Gerhard Ehninger, Friedrich Stölzel, Michael Brand, Martin Bornhäuser, Nona Shayegi
In Vivo Chemical Screen in Zebrafish Embryos Identifies Regulators of Hematopoiesis Using a Semiautomated Imaging Assay.
J Biomol Screen, 21(9) 956-964 (2016)

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Felipe Mora-Bermúdez, Farhath Badsha, Sabina Kanton, J Gray Camp, Benjamin Vernot, Kathrin Köhler, Birger Voigt, Keisuke Okita, Tomislav Maricic, Zhisong He, Robert Lachmann, Svante Pääbo, Barbara Treutlein, Wieland B. Huttner
Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development.
Elife, 5 Art. No. e18683 (2016)

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German Tischler
Low Space External Memory Construction of the Succinct Permuted Longest Common Prefix Array
In: String Processing and Information Retrieval : 23rd International Symposium, SPIRE 2016, Beppu, Japan, October 18-20, 2016, Proceedings (2016) Lecture notes in computer science ; 9954, Cham, Springer International Publishing (2016), 178-190

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Shambaditya Saha, Christoph A. Weber, Marco Nousch, Omar Adame-Arana, Carsten Hoege, Marco Y Hein, Erin Osborne-Nishimura, Julia Mahamid, Marcus Jahnel, Louise Jawerth, Andrei Pozniakovski, Christian R. Eckmann, Frank Jülicher, Anthony Hyman
Polar Positioning of Phase-Separated Liquid Compartments in Cells Regulated by an mRNA Competition Mechanism.
Cell, 166(6) 1572-1584 (2016)

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Massimo Ganassi, Daniel Mateju, Ilaria Bigi, Laura Mediani, Ina Poser, Hyun-Ok Kate Lee, Samuel J Seguin, Federica F Morelli, Jonathan Vinet, Giuseppina Leo, Orietta Pansarasa, Cristina Cereda, Angelo Poletti, Simon Alberti, Serena Carra
A Surveillance Function of the HSPB8-BAG3-HSP70 Chaperone Complex Ensures Stress Granule Integrity and Dynamism.
Mol Cell, 63(5) 796-810 (2016)

---
Benjamin Schmid, Wiebke Jahr, Michael Weber, Jan Huisken
Software Framework for Controlling Unsupervised Scientific Instruments.
PLoS ONE, 11(8) Art. No. e0161671 (2016)

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David Murray, Marcus Jahnel, Janelle Lauer, Mario Avellaneda, Nicolas Brouilly, Alice Cezanne, Hernán Morales-Navarrete, Enrico Perini, Charles Ferguson, Andrei N Lupas, Yannis Kalaidzidis, Robert G. Parton, Stephan W. Grill, Marino Zerial
An endosomal tether undergoes an entropic collapse to bring vesicles together.
Nature, 537(7618) 107-111 (2016)

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Felipe Mora-Bermúdez
Costa Rica: World's last in vitro fertilization ban falls.
Nature, 536(7616) 274-274 (2016)

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Elisabeth Fischer-Friedrich, Yusuke Toyoda, Cedric J Cattin, Daniel J. Müller, Anthony Hyman, Frank Jülicher
Rheology of the Active Cell Cortex in Mitosis.
Biophys J, 111(3) 589-600 (2016)

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Xavier Prudent, Genis Parra, Peter Schwede, Juliana G. Roscito, Michael Hiller
Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species' Phenotypic and Genomic Differences.
Mol Biol Evol, 33(8) 2135-2150 (2016)

---
Elvan Boke, Martine Ruer, Martin Wühr, Margaret Coughlin, Regis P. Lemaitre, Steven Gygi, Simon Alberti, David N. Drechsel, Anthony Hyman, Timothy J. Mitchison
Amyloid-like Self-Assembly of a Cellular Compartment.
Cell, 166(3) 637-650 (2016)

---
Michael Heide, Marta Florio, Wieland B. Huttner
Die Rolle humanspezifischer Gene in der Gehirnentwicklung und -evolution
BIOspektrum, 22(4) 352-355 (2016)

---
Virag Sharma, Anas Elghafari, Michael Hiller
Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation.
Nucleic Acids Res, 44(11) Art. No. e103 (2016)

---
Hernán Morales-Navarrete, Hidenori Nonaka, Fabián Segovia-Miranda, Marino Zerial, Yannis Kalaidzidis
Automatic recognition and characterization of different non-parenchymal cells in liver tissue.
In: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) (2016), Piscataway, N.J., IEEE (2016), 536-540

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Dan V Nicolau, Mercy Lard, Till Korten, Falco C M J M van Delft, Malin Persson, Elina Bengtsson, Alf Månsson, Stefan Diez, Heiner Linke, Dan V Nicolau
Reply to Einarsson: The computational power of parallel network exploration with many bioagents.
Proc Natl Acad Sci U.S.A., 113(23) Art. No. E3188 (2016)

---
Michaela Wilsch-Bräuninger, Marta Florio, Wieland B. Huttner
Neocortex expansion in development and evolution - from cell biology to single genes.
Curr Opin Neurobiol, 39 122-132 (2016)

---
Carlos Garzon-Coral, Horatiu Fantana, Jonathon Howard
A force-generating machinery maintains the spindle at the cell center during mitosis.
Science, 352(6289) 1124-1127 (2016)

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Raphael Etournay, Matthias Merkel, Marko Popović, Holger Brandl, Natalie Dye, Benoit Aigouy, Guillaume Salbreux, Suzanne Eaton, Frank Jülicher
TissueMiner: a multiscale analysis toolkit to quantify how cellular processes create tissue dynamics.
Elife, 5 Art. No. e14334 (2016)

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Marcus Braun, Zdenek Lansky, Feodor Hilitski, Zvonimir Dogic, Stefan Diez
Entropic forces drive contraction of cytoskeletal networks.
Bioessays, 38(5) 474-481 (2016)

---
Cihan Erkut, Vamshidhar Gade, Sunil Laxman, Teymuras V. Kurzchalia
The glyoxylate shunt is essential for desiccation tolerance in C. elegans and budding yeast.
Elife, 5 Art. No. e13614 (2016)

---
Yoko Arai, Wieland B. Huttner, Federico Calegari
Neural stem cells
In: Regenerative Medicine - from Protocol to Patient : Stem Cell Science and Technology . (Eds.) Gustav Steinhoff,Cham,Springer International Publishing (2016),169-208 Ch. 7

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David Flores-Benitez, Elisabeth Knust
Dynamics of epithelial cell polarity in Drosophila: how to regulate the regulators?
Curr Opin Cell Biol, 42 13-21 (2016)

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Marta Florio, Takashi Namba, Katherine Long
The Tortuous Routes of Migrating Neurons in the Folding Neocortex.
J Neurosci, 36(14) 3887-3889 (2016)

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Konstantin Thierbach, Gopi Shah, Ingmar Glauche, Jan Huisken, Ingo Roeder, Nico Scherf
Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm
In: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) (2016), Piscataway, N.J., IEEE (2016), 925-929

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Christopher Schmied, Peter Steinbach, Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak
An automated workflow for parallel processing of large multiview SPIM recordings.
Bioinformatics, 32(7) 1112-1114 (2016)

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Arnab Saha, Masatoshi Nishikawa, Martin Behrndt, Carl-Philipp Heisenberg, Frank Jülicher, Stephan W. Grill
Determining Physical Properties of the Cell Cortex.
Biophys J, 110(6) 1421-1429 (2016)

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Gheorghe Cojoc, Emanuele Roscioli, Lijuan Zhang, Alfonso García-Ulloa, Jagesh V Shah, Michael W Berns, Nenad Pavin, Daniela Cimini, Iva M Tolić, Juraj Gregan
Laser microsurgery reveals conserved viscoelastic behavior of the kinetochore.
J Cell Biol, 212(7) 767-776 (2016)

---
Ana Lisica, Christoph Engel, Marcus Jahnel, Édgar Roldán, Eric A. Galburt, Patrick Cramer, Stephan W. Grill
Mechanisms of backtrack recovery by RNA polymerases I and II.
Proc Natl Acad Sci U.S.A., 113(11) 2946-2951 (2016)

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Dan V Nicolau Jr, Mercy Lard, Till Korten, Falco C M J M van Delft, Malin Persson, Elina Bengtsson, Alf Månsson, Stefan Diez, Heiner Linke, Dan V Nicolau
Parallel computation with molecular-motor-propelled agents in nanofabricated networks.
Proc Natl Acad Sci U.S.A., 113(10) 2591-2596 (2016)

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Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R Shcherbata
Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet.
Genetics, 202(3) 1167-1183 (2016)

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Nereo Kalebic, Elena Taverna, Stefania Tavano, Fong Kuan Wong, Dana Suchold, Sylke Winkler, Wieland B. Huttner, Mihail Sarov
CRISPR/Cas9-induced disruption of gene expression in mouse embryonic brain and single neural stem cells in vivo.
EMBO Rep, 17(3) 338-348 (2016)

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Mihail Sarov, Christiane Barz, Helena Jambor, Marco Y Hein, Christopher Schmied, Dana Suchold, Bettina Stender, Stephan Janosch, Vinay Vikas Kj, R T Krishnan, Aishwarya Krishnamoorthy, Irene R S Ferreira, Radoslaw K Ejsmont, Katja Finkl, Susanne Hasse, Philipp Kämpfer, Nicole Plewka, Elisabeth Vinis, Siegfried Schloissnig, Elisabeth Knust, Volker Hartenstein, Matthias Mann, Mani Ramaswami, K VijayRaghavan, Pavel Tomancak, Frank Schnorrer
A genome-wide resource for the analysis of protein localisation in Drosophila.
Elife, 5 Art. No. e12068 (2016)

---
Miguel Turrero García, Yoon Jeung Chang, Yoko Arai, Wieland B. Huttner
S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex.
J Comp Neurol, 524(3) 456-470 (2016)

---
Sophie Ayciriex, Hermeto Gerber, Guillermo M Garcia Osuna, Mohamed Chami, Henning Stahlberg, Andrej Shevchenko, Patrick C Fraering
The lipidome associated with the γ-secretase complex is required for its integrity and activity.
Biochem J, 473(3) 321-334 (2016)

---
L Carine Stapel, Benoit Lombardot, Coleman Broaddus, Dagmar Kainmueller, Florian Jug, Eugene W Myers, Nadine Vastenhouw
Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos.
Development, 143(3) 540-546 (2016)

---
Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork
The SIDER database of drugs and side effects.
Nucleic Acids Res, 44(D1) 1075-1079 (2016)

---
Damian Szklarczyk, Alberto Santos, Christian von Mering, Lars Juhl Jensen, Peer Bork, Michael Kuhn
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res, 44(D1) 380-384 (2016)

---
Holger Brandl, HongKee Moon, Miquel Vila-Farré, Shang-Yun Liu, Ian Henry, Jochen Rink
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Res, 44 Art. No. D764–D773 (2016)

---
Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C Walter, Thomas Rattei, Daniel R Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res, 44(D1) 286-293 (2016)

---
Nicole Bieberstein, Eva Kozáková, Martina Huranová, Prasoon K Thakur, Zuzana Krchňáková, Michaela Krausová, Fernando Carrillo Oesterreich, David Staněk
TALE-directed local modulation of H3K9 methylation shapes exon recognition.
Sci Rep, 6 Art. No. 29961 (2016)

---
Helena Jambor, Pavel Mejstrik, Pavel Tomancak
Rapid Ovary Mass-Isolation (ROMi) to Obtain Large Quantities of Drosophila Egg Chambers for Fluorescent In Situ Hybridization.
Methods Mol Biol, 1478 253-262 (2016)

---
Gheorghe Cojoc, Ana-Maria Florescu, Alexander Krull, Anna Klemm, Nenad Pavin, Frank Jülicher, Iva M Tolić
Paired arrangement of kinetochores together with microtubule pivoting and dynamics drive kinetochore capture in meiosis I.
Sci Rep, 6 Art. No. 25736 (2016)

---
Yadira Boada, José Luis Pitarch, Alejandro Vignoni, Gilberto Reynoso-Meza, Jesús Picó
Optimization Alternatives for Robust Model-based Design of Synthetic Biological Circuits
IFAC-PapersOnLine, 49(7) 821-826 (2016)

---
Elena Taverna, Felipe Mora-Bermúdez, Paulina J. Strzyz, Marta Florio, Jaroslav Icha, Christiane Haffner, Caren Norden, Michaela Wilsch-Bräuninger, Wieland B. Huttner
Non-canonical features of the Golgi apparatus in bipolar epithelial neural stem cells.
Sci Rep, 6 Art. No. 21206 (2016)

---
Mykola Mylenko, Sebastian Boland, Sider Penkov, Julio Sampaio, Benoit Lombardot, Daniela Vorkel, Jean-Marc Verbavatz, Teymuras V. Kurzchalia
NAD+ Is a Food Component That Promotes Exit from Dauer Diapause in Caenorhabditis elegans.
PLoS ONE, 11(12) Art. No. e0167208 (2016)

---
Till Korten, Samata Chaudhuri, Elena Tavkin, Marcus Braun, Stefan Diez
Kinesin-1 Expressed in Insect Cells Improves Microtubule in Vitro Gliding Performance, Long-Term Stability and Guiding Efficiency in Nanostructures.
IEEE Trans Nanobioscience, 15(1) 62-69 (2016)

---
Susanne Sales, Juergen Graessler, Sara Ciucci, Rania Al-Atrib, Terhi Vihervaara, Kai Schuhmann, Dimple Kauhanen, Marko Sysi-Aho, Stefan Bornstein, Marc Bickle, Carlo Vittorio Cannistraci, Kim Ekroos, Andrej Shevchenko
Gender, Contraceptives and Individual Metabolic Predisposition Shape a Healthy Plasma Lipidome.
Sci Rep, 6 Art. No. 27710 (2016)

---
Wiebke Jahr, Benjamin Schmid, Michael Weber, Jan Huisken
eduSPIM: Light Sheet Microscopy in the Museum.
PLoS ONE, 11(8) Art. No. e0161402 (2016)

---
Jon M Carthy, Martin Stöter, Claudia Bellomo, Michael Vanlandewijck, Angelos Heldin, Anita Morén, Dimitris Kardassis, Timothy C Gahman, Andrew K Shiau, Marc Bickle, Marino Zerial, Carl-Henrik Heldin, Aristidis Moustakas
Chemical regulators of epithelial plasticity reveal a nuclear receptor pathway controlling myofibroblast differentiation.
Sci Rep, 6 Art. No. 29868 (2016)

---
Linda Cerofolini, Sabrina Amar, Janelle Lauer, Tommaso Martelli, Marco Fragai, Claudio Luchinat, Gregg B Fields
Bilayer Membrane Modulation of Membrane Type 1 Matrix Metalloproteinase (MT1-MMP) Structure and Proteolytic Activity.
Sci Rep, 6 Art. No. 29511 (2016)

---
Xun Xiao, Veikko Geyer, Hugo Bowne-Anderson, Jonathon Howard, Ivo F. Sbalzarini
Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets
Med Image Anal, 32 157-172 (2016)

---
Matthias Munder, Daniel Midtvedt, Titus Franzmann, Elisabeth Nüske, Oliver Otto, Maik Herbig, Elke Ulbricht, Paul Müller, Anna Taubenberger, Shovamayee Maharana, Liliana Malinovska, Doris Richter, Jochen Guck, Vasily Zaburdaev, Simon Alberti
A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy.
Elife, 5 Art. No. e09347 (2016)

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Mark Leaver, Simone Kienle, Maria L Begasse, Ralf J Sommer, Anthony Hyman
A locus in Pristionchus pacificus that is responsible for the ability to give rise to fertile offspring at higher temperatures.
Biol Open, 5(8) 1111-1117 (2016)

2015

Michael Weber, Jan Huisken
In vivo imaging of cardiac development and function in zebrafish using light sheet microscopy.
Swiss Med Wkly, 145 Art. No. w14227 (2015)

---
J Gray Camp, Farhath Badsha, Marta Florio, Sabina Kanton, Tobias Gerber, Michaela Wilsch-Bräuninger, Eric Lewitus, Alex Sykes, Wulf Hevers, Madeline Lancaster, Jürgen A. Knoblich, Robert Lachmann, Svante Pääbo, Wieland B. Huttner, Barbara Treutlein
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.
Proc Natl Acad Sci U.S.A., 112(51) 15672-15677 (2015)

---
Hernán Morales-Navarrete, Fabián Segovia-Miranda, Piotr Klukowski, Kirstin Meyer, Hidenori Nonaka, Giovanni Marsico, Mikhail Chernykh, Alexander Kalaidzidis, Marino Zerial, Yannis Kalaidzidis
A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture.
Elife, 4 Art. No. e11214 (2015)

---
Sarita Hebbar, Ishtapran Sahoo, Artur Matysik, Irene Argudo Garcia, Kathleen Amy Osborne, Cyrus Papan, Federico Torta, Pradeep Narayanaswamy, Xiu Hui Fun, Markus R Wenk, Andrej Shevchenko, Dominik Schwudke, Rachel Kraut
Ceramides And Stress Signalling Intersect With Autophagic Defects In Neurodegenerative Drosophila blue cheese (bchs) Mutants.
Sci Rep, 5 Art. No. 15926 (2015)

---
Kathrin Reichwald, Andreas Petzold, Philipp Koch, Bryan R Downie, Nils Hartmann, Stefan Pietsch, Mario Baumgart, Domitille Chalopin, Marius Felder, Martin Bens, Arne Sahm, Karol Szafranski, Stefan Taudien, Marco Groth, Ivan Arisi, Anja Weise, Samarth S Bhatt, Virag Sharma, Johann M Kraus, Florian Schmid, Steffen Priebe, Thomas Liehr, Matthias Görlach, Manuel E Than, Michael Hiller, Hans A Kestler, Jean-Nicolas Volff, Manfred Schartl, Alessandro Cellerino, Christoph Englert, Matthias Platzer
Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish.
Cell, 163(6) 1527-1538 (2015)

---
Felipe Mora-Bermúdez, Wieland B. Huttner
Novel insights into mammalian embryonic neural stem cell division: focus on microtubules.
Mol Biol Cell, 26(24) 4302-4306 (2015)

---
David Richmond, Dagmar Kainmueller, Ben Glocker, Carsten Rother, Gene Myers
Uncertainty-Driven Forest Predictors for Vertebra Localization and Segmentation
In: Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015 : 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I (2015) Lecture Notes in Computer Science ; 9349, Cham, Springer International Publishing (2015), 653-660

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Anneke Hibbel, Aliona Bogdanova, Mohammed Mahamdeh, Anita Jannasch, Marko Storch, Erik Schäffer, Dimitris Liakopoulos, Jonathon Howard
Kinesin Kip2 enhances microtubule growth in vitro through length-dependent feedback on polymerization and catastrophe.
Elife, 4 Art. No. e10542 (2015)

---
Alexander Mietke, Oliver Otto, Salvatore Girardo, Philipp Rosendahl, Anna Taubenberger, Stefan Golfier, Elke Ulbricht, Sebastian Aland, Jochen Guck, Elisabeth Fischer-Friedrich
Extracting Cell Stiffness from Real-Time Deformability Cytometry: Theory and Experiment.
Biophys J, 109(10) 2023-2036 (2015)

---
David Flores-Benitez, Elisabeth Knust
Crumbs is an essential regulator of cytoskeletal dynamics and cell-cell adhesion during dorsal closure in Drosophila.
Elife, 4 Art. No. e07398 (2015)

---
Oksana Lavrynenko, Jonathan Rodenfels, Maria Carvalho, Natalie Dye, Rene Lafont, Suzanne Eaton, Andrej Shevchenko
The ecdysteroidome of Drosophila: influence of diet and development.
Development, 142(21) 3758-3768 (2015)

---
Dimitrios Papadopoulos, Aleksandar J Krmpot, Stanko N Nikolić, Robert Krautz, Lars Terenius, Pavel Tomancak, Rudolf Rigler, Walter J Gehring, Vladana Vukojević
Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy.
Mech Dev, 138(2) 218-225 (2015)

---
Benjamin Schmid, Jan Huisken
Real-time multi-view deconvolution.
Bioinformatics, 31(20) 3398-3400 (2015)

---
Inna Kalaidzidis, Marta Miaczynska, Marta Brewińska-Olchowik, Anna Hupalowska, Charles Ferguson, Robert G. Parton, Yannis Kalaidzidis, Marino Zerial
APPL endosomes are not obligatory endocytic intermediates but act as stable cargo-sorting compartments.
J Cell Biol, 211(1) 123-144 (2015)

---
Edo Dzafic, Paulina J. Strzyz, Michaela Wilsch-Bräuninger, Caren Norden
Centriole Amplification in Zebrafish Affects Proliferation and Survival but Not Differentiation of Neural Progenitor Cells.
Cell Rep, 13(1) 168-182 (2015)

---
James Sáenz, Daniel Grosser, Alexander S Bradley, Thibaut Lagny, Oksana Lavrynenko, Martyna Broda, Kai Simons
Hopanoids as functional analogues of cholesterol in bacterial membranes.
Proc Natl Acad Sci U.S.A., 112(38) 11971-11976 (2015)

---
Jerome Gilleron, Prasath Paramasivam, Anja Zeigerer, William Querbes, Giovanni Marsico, Cordula Andree, Sarah Seifert, Pablo Amaya, Martin Stöter, Victor Koteliansky, Herbert Waldmann, Kevin Fitzgerald, Yannis Kalaidzidis, Akin Akinc, Martin A Maier, Muthiah Manoharan, Marc Bickle, Marino Zerial
Identification of siRNA delivery enhancers by a chemical library screen.
Nucleic Acids Res, 43(16) 7984-8001 (2015)

---
Liliana Malinovska, Simon Alberti
Protein misfolding in Dictyostelium: Using a freak of nature to gain insight into a universal problem.
Prion, 9(5) 339-346 (2015)

---
Wiebke Jahr, Benjamin Schmid, Christopher Schmied, Florian Fahrbach, Jan Huisken
Hyperspectral light sheet microscopy.
Nat Commun, 6 Art. No. 7990 (2015)

---
Jan Böttger, Katrin Arnold, Carlo Thiel, Christiane Rennert, Susanne Aleithe, Ute Hofmann, Sebastian Vlaic, Susanne Sales, Andrej Shevchenko, Madlen Matz-Soja
RNAi in murine hepatocytes: the agony of choice-a study of the influence of lipid-based transfection reagents on hepatocyte metabolism.
Arch Toxicol, 89(9) 1579-1588 (2015)

---
Avinash Patel, Hyun-Ok Kate Lee, Louise Jawerth, Shovamayee Maharana, Marcus Jahnel, Marco Y Hein, Stoyno Stoynov, Julia Mahamid, Shambaditya Saha, Titus Franzmann, Andrei Pozniakovski, Ina Poser, Nicola Maghelli, Loic Royer, Martin Weigert, Eugene W Myers, Stephan W. Grill, David N. Drechsel, Anthony Hyman, Simon Alberti
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.
Cell, 162(5) 1066-1077 (2015)

---
Li Ding, Maciej Paszkowski-Rogacz, Maria Winzi, Debojyoti Chakraborty, Mirko Theis, Sukhdeep Singh, Giovanni Ciotta, Ina Poser, Assen Roguev, Wai Kit Chu, Chunaram Choudhary, Matthias Mann, A. Francis Stewart, Nevan J Krogan, Frank Buchholz
Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells.
Cell Sys, 1(2) 141-151 (2015)

---
Nico Scherf, Jan Huisken
The smart and gentle microscope.
Nat Biotechnol, 33(8) 815-818 (2015)

---
Cihan Erkut, Teymuras V. Kurzchalia
The C. elegans dauer larva as a paradigm to study metabolic suppression and desiccation tolerance.
Planta, 242(2) 389-396 (2015)

---
Fong Kuan Wong, Jifeng Fei, Felipe Mora-Bermúdez, Elena Taverna, Christiane Haffner, Jun Fu, Konstantinos Anastassiadis, A Francis Stewart, Wieland B. Huttner
Sustained Pax6 Expression Generates Primate-like Basal Radial Glia in Developing Mouse Neocortex.
PLoS Biol, 13(8) Art. No. e1002217 (2015)

---
Mareike Albert, Wieland B. Huttner
Clever space saving-how the cerebral cortex folds.
EMBO J, 34(14) 1845-1847 (2015)

---
Mesut Bilgin, Laura Bindila, Juergen Graessler, Andrej Shevchenko
Quantitative profiling of endocannabinoids in lipoproteins by LC-MS/MS.
Anal Bioanal Chem, 407(17) 5125-5131 (2015)

---
David Flores-Benitez, Elisabeth Knust
Ménage a Trois to Form the Tricellular Junction.
Dev Cell, 33(5) 501-503 (2015)

---
Alexandra Kumichel, Katja Kapp, Elisabeth Knust
A Conserved Di-Basic Motif of Drosophila Crumbs Contributes to Efficient ER Export.
Traffic, 16(6) 604-616 (2015)

---
Loic Royer, Martin Weigert, Ulrik Günther, Nicola Maghelli, Florian Jug, Ivo F. Sbalzarini, Eugene W Myers
ClearVolume: open-source live 3D visualization for light-sheet microscopy.
Nat Methods, 12(6) 480-481 (2015)

---
Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak
BigDataViewer: visualization and processing for large image data sets.
Nat Methods, 12(6) 481-483 (2015)

---
Carlas S Smith, Stephan Preibisch, Aviva Joseph, Sara Abrahamsson, Bernd Rieger, Eugene Myers, Robert H. Singer, David Grunwald
Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.
J Cell Biol, 209(4) 609-619 (2015)

---
Liliana Malinovska, Sandra Palm, Kimberley Gibson, Jean-Marc Verbavatz, Simon Alberti
Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation.
Proc Natl Acad Sci U.S.A., 112(20) 2620-2629 (2015)

---
Jeffrey Woodruff, Oliver Wueseke, Valeria Viscardi, Julia Mahamid, Stacy D Ochoa, Jakob Bunkenborg, Per Widlund, Andrei I. Pozniakovsky, Esther Zanin, Shirin Bahmanyar, Andrea Zinke, Sun Hae Hong, Markus Decker, Wolfgang Baumeister, Jens S Andersen, Karen Oegema, Anthony Hyman
Centrosomes. Regulated assembly of a supramolecular centrosome scaffold in vitro.
Science, 348(6236) 808-812 (2015)

---
Anja Zeigerer, Roman L Bogorad, Kirti Sharma, Jerome Gilleron, Sarah Seifert, Susanne Sales, Nikolaus Berndt, Sascha Bulik, Giovanni Marsico, Rochelle C J D'Souza, Naharajan Lakshmanaperumal, Kesavan Meganathan, Karthick Natarajan, Agapios Sachinidis, Andreas Dahl, Hermann-Georg Holzhütter, Andrej Shevchenko, Matthias Mann, Victor Koteliansky, Marino Zerial
Regulation of Liver Metabolism by the Endosomal GTPase Rab5.
Cell Rep, 11(6) 884-892 (2015)

---
Sebastian Dunst, Tom Kazimiers, Felix von Zadow, Helena Jambor, Andreas Sagner, Beate Brankatschk, Ali Mahmoud, Stephanie Spannl, Pavel Tomancak, Suzanne Eaton, Marko Brankatschk
Endogenously Tagged Rab Proteins: A Resource to Study Membrane Trafficking in Drosophila.
Dev Cell, 33(3) 351-365 (2015)

---
Marisa P. McShane, Tim Friedrichson, Angelika Giner, Felix Meyenhofer, Rico Barsacchi, Marc Bickle, Marino Zerial
A Combination of Screening and Computational Approaches for the Identification of Novel Compounds That Decrease Mast Cell Degranulation.
J Biomol Screen, 20(6) 720-728 (2015)

---
Florian Jug, Tobias Pietzsch, Dagmar Kainmueller, Gene Myers
Tracking by Assignment Facilitates Data Curation
In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014 (2015) IMIC Interactive Medical Image Computing Workshop, Amsterdam, Netherlands, Academic Press (2015), 1-12

---
Marta Florio, Mareike Albert, Elena Taverna, Takashi Namba, Holger Brandl, Eric Lewitus, Christiane Haffner, Alex Sykes, Fong Kuan Wong, Jula Peters, E. Guhr, Sylvia Klemroth, Kay Prüfer, Janet Kelso, Ronald Naumann, Ina Nüsslein, Andreas Dahl, Robert Lachmann, Svante Pääbo, Wieland B. Huttner
Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Science, 347(6229) 1465-1470 (2015)

---
Helena Khaliullina, Mesut Bilgin, Julio Sampaio, Andrej Shevchenko, Suzanne Eaton
Endocannabinoids are conserved inhibitors of the Hedgehog pathway.
Proc Natl Acad Sci U.S.A., 112(11) 3415-3420 (2015)

---
Marc Gentzel, Carolin Schille, Verena Rauschenberger, Alexandra Schambony
Distinct functionality of dishevelled isoforms on Ca2+/calmodulin-dependent protein kinase 2 (CamKII) in Xenopus gastrulation.
Mol Biol Cell, 26(5) 966-977 (2015)

---
Michael Habeck, Haim Haviv, Adriana Katz, Einat Kapri-Pardes, Sophie Ayciriex, Andrej Shevchenko, Haruo Ogawa, Chikashi Toyoshima, Steven J D Karlish
Stimulation, Inhibition, or Stabilization of Na,K-ATPase Caused by Specific Lipid Interactions at Distinct Sites.
J Biol Chem, 290(8) 4829-4842 (2015)

---
Maria L Begasse, Mark Leaver, Federico Vazquez, Stephan W. Grill, Anthony Hyman
Temperature Dependence of Cell Division Timing Accounts for a Shift in the Thermal Limits of C. elegans and C. briggsae.
Cell Rep, 10(5) 647-653 (2015)

---
Roberto Villaseñor, Hidenori Nonaka, Perla Del Conte-Zerial, Yannis Kalaidzidis, Marino Zerial
Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes.
Elife, 4 Art. No. e06156 (2015)

---
Marta Maria Swierczynska, Ivona Mateska, M Peitzsch, Stefan Bornstein, Trian Chavakis, G Eisenhofer, Valéria Lamounier-Zepter, Suzanne Eaton
Changes in morphology and function of adrenal cortex in mice fed a high-fat diet.
Int J Obes (Lond), 39(2) 321-330 (2015)

---
Helena Jambor, Vineeth Surendranath, Alex T. Kalinka, Pavel Mejstrik, Stephan Saalfeld, Pavel Tomancak
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.
Elife, 4 Art. No. e05003 (2015)

---
Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, Kristoffer Forslund, Davide Heller, Jaime Huerta-Cepas, Milan Simonovic, Alexander Roth, Alberto Santos, Kalliopi P Tsafou, Michael Kuhn, Peer Bork, Lars Juhl Jensen, Christian von Mering
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Nucleic Acids Res, 43(D1) 447-452 (2015)

---
Sonja Kroschwald, Shovamayee Maharana, Daniel Mateju, Liliana Malinovska, Elisabeth Nüske, Ina Poser, Doris Richter, Simon Alberti
Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules.
Elife, 4 Art. No. e06807 (2015)

---
Eric Lewitus, Wieland B. Huttner
Neurodevelopmental LincRNA Microsyteny Conservation and Mammalian Brain Size Evolution.
PLoS ONE, 10(7) Art. No. e0131818 (2015)

---
Amulya Priya, Inna Kalaidzidis, Yannis Kalaidzidis, David Lambright, Sunando Datta
Molecular insights into rab7-mediated endosomal recruitment of core retromer: deciphering the role of vps26 and vps35.
Traffic, 16(1) 68-84 (2015)

---
Jeffrey Woodruff, Anthony Hyman
Method: In vitro analysis of pericentriolar material assembly.
Methods Cell Biol, 129 369-382 (2015)

---
Yoko Arai, Julio Sampaio, Michaela Wilsch-Bräuninger, Andreas Ettinger, Christiane Haffner, Wieland B. Huttner
Lipidome of midbody released from neural stem and progenitor cells during mammalian cortical neurogenesis.
Front Cell Neurosci, 9 Art. No. 325 (2015)

---
Raphael Etournay, Marko Popović, Matthias Merkel, Amitabha Nandi, Corinna Blasse, Benoit Aigouy, Holger Brandl, Gene Myers, Guillaume Salbreux, Frank Jülicher, Suzanne Eaton
Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing.
Elife, 4 Art. No. e07090 (2015)

---
Sider Penkov, Damla Kaptan, Cihan Erkut, Mihail Sarov, Fanny Mende, Teymuras V. Kurzchalia
Integration of carbohydrate metabolism and redox state controls dauer larva formation in Caenorhabditis elegans.
Nat Commun, 6 Art. No. 8060 (2015)

---
Simone Reber, Anthony A. Hyman
Emergent Properties of the Metaphase Spindle
In: Mitosis : a subject collection form Cold Spring Harbor Perspectives in biology. (Eds.) Mitsuhiro Yanagida, Anthony A. Hyman, Jonathon Pines,Cold Spring Harbor, N.Y,Cold Spring Harbor Laboratory Press (2015),31-52

---
Judith Paridaen, Wieland B. Huttner, Michaela Wilsch-Bräuninger
Analysis of primary cilia in the developing mouse brain.
Methods Cell Biol, 127 93-129 (2015)

2014

Joshua Alper, Franziska Decker, Bernice Agana, Jonathon Howard
The Motility of Axonemal Dynein Is Regulated by the Tubulin Code
Biophys J, 107(12) 2872-2880 (2014)

---
Xin Liang, Johnson Madrid, Jonathon Howard
The microtubule-based cytoskeleton is a component of a mechanical signaling pathway in fly campaniform receptors.
Biophys J, 107(12) 2767-2774 (2014)

---
Andrea Meinhardt, Dominic Eberle, Akira Tazaki, Adrian Ranga, Marco Niesche, Michaela Wilsch-Bräuninger, Agnieszka Stec, Gabriele Schackert, Matthias Lutolf, Elly M. Tanaka
3D Reconstitution of the Patterned Neural Tube from Embryonic Stem Cells.
Stem Cell Reports, 3(6) 987-999 (2014)

---
Martin Machyna, Stephanie Kehr, Korinna Straube, Dennis Kappei, Frank Buchholz, Falk Butter, Jernej Ule, Jana Hertel, Peter F Stadler, Karla M. Neugebauer
The Coilin Interactome Identifies Hundreds of Small Noncoding RNAs that Traffic through Cajal Bodies
Mol Cell, 56(3) 389-399 (2014)

---
Sawsan E Abusharkh, Cihan Erkut, Jana Oertel, Teymuras V. Kurzchalia, Karim Fahmy
The Role of Phospholipid Headgroup Composition and Trehalose in the Desiccation Tolerance of Caenorhabditis elegans.
Langmuir, 30(43) 12897-12906 (2014)

---
Florian Jug, Tobias Pietzsch, Dagmar Kainmueller, Jan Funke, Matthias Kaiser, Erik van Nimwegen, Carsten Rother, Gene Myers
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine
In: Bayesian and grAphical models for biomedical imaging first international workshop, BAMBI 2014, Cambridge, MA, USA, September 18, 2014 ; revised selected papers (2014) Lecture Notes in Computer Science ; 8677, New York, Springer (2014), 25-36

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Fabian Rost, Christina Eugster, Christian Schröter, Andrew C. Oates, Lutz Brusch
Chevron formation of the zebrafish muscle segments.
J Exp Biol, 217(21) 3870-3882 (2014)

---
Dagmar Kainmueller, Florian Jug, Carsten Rother, Eugene W Myers
Active Graph Matching for Automatic Joint Segmentation and Annotation of C. elegans
In: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014 : 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part I (2014) Lecture Notes in Computer Science ; 8673 , New York, Springer (2014), 81-88

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Bi-Chang Chen, Wesley R Legant, Kai Wang, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer, Zhe Liu, Brian P English, Yuko Mimori-Kiyosue, Daniel P Romero, Alex T Ritter, Jennifer Lippincott-Schwartz, Lillian Fritz-Laylin, R Dyche Mullins, Diana M Mitchell, Joshua N Bembenek, Anne-Cecile Reymann, Ralph Böhme, Stephan W. Grill, Jennifer T Wang, Geraldine Seydoux, U Serdar Tulu, Daniel P Kiehart, Eric Betzig
Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.
Science, 346(6208) Art. No. 1257998 (2014)

---
Marnix Wieffer, Marisa P. McShane, Marino Zerial
Rab Proteins and the Organization of Organelle Membrane Domains.
In: Ras Superfamily Small G Proteins: Biology and Mechanisms : 2. (Eds.) Alfred Wittinghofer,Cham,Springer International Publishing (2014),17-38 Ch. 2

---
Elena Taverna, Magdalena Götz, Wieland B. Huttner
The cell biology of neurogenesis: toward an understanding of the development and evolution of the neocortex.
Annu Rev Cell Dev Biol, 30 465-502 (2014)

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Oliver Wueseke, Jakob Bunkenborg, Marco Y Hein, Andrea Zinke, Valeria Viscardi, Jeffrey Woodruff, Karen Oegema, Matthias Mann, Jens S Andersen, Anthony Hyman
The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix.
Mol Biol Cell, 25(19) 2984-2992 (2014)

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Christoph Klingner, Anoop V Cherian, Johannes Fels, Philipp M Diesinger, Roland Aufschnaiter, Nicola Maghelli, Thomas Keil, Gisela Beck, Iva M. Tolic-Norrelykke, Mark Bathe, Roland Wedlich-Soldner
Isotropic actomyosin dynamics promote organization of the apical cell cortex in epithelial cells.
J Cell Biol, 207(1) 107-121 (2014)

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Marco Nousch, Assa Yeroslaviz, Bianca Habermann, Christian R. Eckmann
The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms.
Nucleic Acids Res, 42(18) 11622-11633 (2014)

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Jeffrey Woodruff, Oliver Wueseke, Anthony Hyman
Pericentriolar material structure and dynamics.
Philos Trans R Soc Lond B Biol Sci, 369(1650) Art. No. 20130459 (2014)

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Enrico Perini, Ramona Schaefer, Martin Stöter, Yannis Kalaidzidis, Marino Zerial
Mammalian CORVET Is Required for Fusion and Conversion of Distinct Early Endosome Subpopulations.
Traffic, 15(12) 1366-1389 (2014)

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Sophia Millonigg, Ryuji Minasaki, Marco Nousch, Christian R. Eckmann
GLD-4-Mediated Translational Activation Regulates the Size of the Proliferative Germ Cell Pool in the Adult C. elegans Germ Line.
PLoS Genet, 10(9) Art. No. e1004647 (2014)

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Michaela Mickoleit, Benjamin Schmid, Michael Weber, Florian Fahrbach, Sonja Hombach, Sven Reischauer, Jan Huisken
High-resolution reconstruction of the beating zebrafish heart.
Nat Methods, 11(9) 919-922 (2014)

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Daniele Soroldoni, David J. Jörg, Luis G. Morelli, David Richmond, Johannes Schindelin, Frank Jülicher, Andrew C. Oates
A Doppler effect in embryonic pattern formation
Science, 345(6193) 222-225 (2014)

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Felipe Mora-Bermúdez, Fumio Matsuzaki, Wieland B. Huttner
Specific polar subpopulations of astral microtubules control spindle orientation and symmetric neural stem cell division.
Elife, 3 Art. No. e02875 (2014)

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Yusuke Toyoda, Cihan Erkut, Francisco Pan-Montojo, Sebastian Boland, Martin P Stewart, Daniel J. Müller, Wolfgang Wurst, Anthony Hyman, Teymuras V. Kurzchalia
Products of the Parkinson's disease-related glyoxalase DJ-1, D-lactate and glycolate, support mitochondrial membrane potential and neuronal survival.
Biol Open, 3(8) 777-784 (2014)

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Sarita Hebbar, Wolf Dieter Schulz, Ulrich Sauer, Dominik Schwudke
Laser capture microdissection coupled with on-column extraction LC-MS(n) enables lipidomics of fluorescently labeled Drosophila neurons.
Anal Chem, 86(11) 5345-5352 (2014)

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Ramya Lakshminarayan, Christian Wunder, Ulrike Becken, Mark T Howes, Carola Benzing, Senthil Arumugam, Susanne Sales, Nicholas Ariotti, Valérie Chambon, Christophe Lamaze, Damarys Loew, Andrej Shevchenko, Katharina Gaus, Robert G. Parton, Ludger Johannes
Galectin-3 drives glycosphingolipid-dependent biogenesis of clathrin-independent carriers.
Nat Cell Biol, 16(6) 595-606 (2014)

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Laurence Ramsey, Viktor Schroeder, Harm van Zalinge, Michael Berndt, Till Korten, Stefan Diez, Dan V Nicolau
Control and gating of kinesin-microtubule motility on electrically heated thermo-chips.
Biomed Microdevices, 16(3) 459-463 (2014)

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Michael Kuhn, Anthony Hyman, Andreas Beyer
Coiled-coil proteins facilitated the functional expansion of the centrosome.
PLoS Comput Biol, 10(6) Art. No. e1003657 (2014)

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Fong Kuan Wong, Christiane Haffner, Wieland B. Huttner, Elena Taverna
Microinjection of membrane-impermeable molecules into single neural stem cells in brain tissue.
Nat Protoc, 9(5) 1170-1182 (2014)

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Judith Paridaen, Wieland B. Huttner
Neurogenesis during development of the vertebrate central nervous system.
EMBO Rep, 15(4) 351-364 (2014)

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Nagananda Gurudev, Michaela Yuan, Elisabeth Knust
chaoptin, prominin, eyes shut and crumbs form a genetic network controlling the apical compartment of Drosophila photoreceptor cells.
Biol Open, 3(5) 332-341 (2014)

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Florian Jug, Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak
Bioimage Informatics in the context of Drosophila research.
Methods, 68(1) 60-73 (2014)

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Sider Penkov, Akira Ogawa, Ulrike Schmidt, Dhananjay Tate, Vyacheslav Zagoriy, Sebastian Boland, Margit Gruner, Daniela Vorkel, Jean-Marc Verbavatz, Ralf J Sommer, Hans-Joachim Knölker, Teymuras V. Kurzchalia
A wax ester promotes collective host finding in the nematode Pristionchus pacificus.
Nat Chem Biol, 10(4) 281-285 (2014)

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Minna-Liisa Ankö, Karla M. Neugebauer
Immunopurification of Endogenous RNAs Associated with RNA Binding Proteins In vivo
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Cyrus Papan, Sider Penkov, Ronny Herzog, Christoph Thiele, Teymuras V. Kurzchalia, Andrej Shevchenko
Systematic screening for novel lipids by shotgun lipidomics.
Anal Chem, 86(5) 2703-2710 (2014)

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Helena Jambor, Sandra Mueller, Simon L Bullock, Anne Ephrussi
A stem-loop structure directs oskar mRNA to microtubule minus ends.
RNA, 20(4) 429-439 (2014)

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Katharina Seitz, Verena Dürsch, Jakub Harnoš, Vitezslav Bryja, Marc Gentzel, Alexandra Schambony
β-Arrestin interacts with the beta/gamma subunits of trimeric G-proteins and dishevelled in the Wnt/Ca(2+) pathway in xenopus gastrulation.
PLoS ONE, 9(1) Art. No. e87132 (2014)

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Stefanie Redemann, Britta Weber, Marit Möller, Jean-Marc Verbavatz, Anthony Hyman, Daniel Baum, Steffen Prohaska, Thomas Müller-Reichert
The segmentation of microtubules in electron tomograms using Amira.
Methods Mol Biol, 1136 261-278 (2014)

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Ruth Rincon-Heredia, David Flores-Benitez, Catalina Flores-Maldonado, José Bonilla-Delgado, Vicky García-Hernández, Odette Verdejo-Torres, Aida M Castillo, Isabel Larré, Augusto C Poot-Hernández, Martha Franco, Patricio Gariglio, José L Reyes, Rubén G Contreras
Ouabain induces endocytosis and degradation of tight junction proteins through ERK1/2-dependent pathways.
Exp Cell Res, 320(1) 108-118 (2014)

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Roman L Bogorad, Hao Yin, Anja Zeigerer, Hidenori Nonaka, Vera M Ruda, Marino Zerial, Daniel G Anderson, Victor Koteliansky
Nanoparticle-formulated siRNA targeting integrins inhibits hepatocellular carcinoma progression in mice.
Nat Commun, 5 Art. No. 3869 (2014)

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Alexis Webb, Daniele Soroldoni, Annelie Oswald, Johannes Schindelin, Andrew C. Oates
Generation of dispersed presomitic mesoderm cell cultures for imaging of the zebrafish segmentation clock in single cells.
J Vis Exp, (89) Art. No. e50307 (2014)

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Nicole Bieberstein, Korinna Straube, Karla M. Neugebauer
Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing.
Methods Mol Biol, 1126 315-323 (2014)

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Daiki Umetsu, Sebastian Dunst, Christian Dahmann
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the eph receptor.
PLoS ONE, 9(12) Art. No. e114340 (2014)

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Sundar Naganathan, Sebastian Fürthauer, Masatoshi Nishikawa, Frank Jülicher, Stephan W. Grill
Active torque generation by the actomyosin cell cortex drives left-right symmetry breaking.
Elife, 3 Art. No. e04165 (2014)

2013

Cihan Erkut, Andrej Vasilj, Sebastian Boland, Bianca Habermann, Andrej Shevchenko, Teymuras V. Kurzchalia
Molecular Strategies of the Caenorhabditis elegans Dauer Larva to Survive Extreme Desiccation.
PLoS ONE, 8(12) Art. No. e82473 (2013)

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Mike Bonny, Elisabeth Fischer-Friedrich, Martin Loose, Petra Schwille, Karsten Kruse
Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation.
PLoS Comput Biol, 9(12) Art. No. e1003347 (2013)

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Aniket Ghosh, Tina Kling, Nicolas Snaidero, Julio Sampaio, Andrej Shevchenko, Heribert Gras, Bart Geurten, Martin Göpfert, Jörg B Schulz, Aaron Voigt, Mikael Simons
A Global In Vivo Drosophila RNAi Screen Identifies a Key Role of Ceramide Phosphoethanolamine for Glial Ensheathment of Axons.
PLoS Genet, 9(12) Art. No. e1003980 (2013)

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Judith Paridaen, Michaela Wilsch-Bräuninger, Wieland B. Huttner
Asymmetric inheritance of centrosome-associated primary cilium membrane directs ciliogenesis after cell division.
Cell, 155(2) 333-344 (2013)

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Simone Reber, Johannes Baumgart, Per Widlund, Andrei I. Pozniakovsky, Jonathon Howard, Anthony Hyman, Frank Jülicher
XMAP215 activity sets spindle length by controlling the total mass of spindle microtubules
Nat Cell Biol, 15(9) 1116-1122 (2013)

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Sameer Agarwal, Cornelia Schroeder, Georg Schlechtingen, Tobias Braxmeier, Gary Jennings, Hans-Joachim Knölker
Evaluation of steroidal amines as lipid raft modulators and potential anti-influenza agents.
Bioorg Med Chem Lett, 23(18) 5165-5169 (2013)

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Esther Zanin, Arshad Desai, Ina Poser, Yusuke Toyoda, Cordula Andree, Claudia Moebius, Marc Bickle, Barbara Conradt, Alisa Piekny, Karen Oegema
A conserved RhoGAP limits M phase contractility and coordinates with microtubule asters to confine RhoA during cytokinesis.
Dev Cell, 26(5) 496-510 (2013)

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Ivana Viktorinová, Christian Dahmann
Microtubule Polarity Predicts Direction of Egg Chamber Rotation in Drosophila.
Curr Biol, 23(15) 1472-1477 (2013)

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Viktor Schroeder, Till Korten, Heiner Linke, Stefan Diez, Ivan Maximov
Dynamic Guiding of Motor-Driven Microtubules on Electrically Heated, Smart Polymer Tracks.
Nano Lett, 13(7) 3434-3438 (2013)

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Sandra Soukup, Shirin Pocha, Michaela Yuan, Elisabeth Knust
DLin-7 Is Required in Postsynaptic Lamina Neurons to Prevent Light-Induced Photoreceptor Degeneration in Drosophila.
Curr Biol, 23(14) 1349-1354 (2013)

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Marija Zanic, Per Widlund, Anthony Hyman, Jonathon Howard
Synergy between XMAP215 and EB1 increases microtubule growth rates to physiological levels.
Nat Cell Biol, 15(6) 688-693 (2013)

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Miguel Coelho, Nicola Maghelli, Iva M. Tolic-Norrelykke
Single-molecule imaging in vivo: The dancing building blocks of the cell.
Integr Biol (Camb), 5(5) 748-758 (2013)

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Carsten Hoege, Anthony Hyman
Principles of PAR polarity in Caenorhabditis elegans embryos.
Nat Rev Mol Cell Biol, 14(5) 315-322 (2013)

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Hugo Bowne-Anderson, Marija Zanic, Monika Kauer, Jonathon Howard
Microtubule dynamic instability: a new model with coupled GTP hydrolysis and multistep catastrophe.
Bioessays, 35(5) 452-461 (2013)

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Zoltan Maliga, Magno Junqueira, Yusuke Toyoda, Andreas Ettinger, Felipe Mora-Bermúdez, Robin Klemm, Andrej Vasilj, E. Guhr, Itziar Ibarlucea-Benitez, Ina Poser, Enzio Bonifacio, Wieland B. Huttner, Andrej Shevchenko, Anthony Hyman
A genomic toolkit to investigate kinesin and myosin motor function in cells.
Nat Cell Biol, 15(3) 325-334 (2013)

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Radhakrishnan Nagarajan, Alex T. Kalinka, William R Hogan
Evidence of community structure in Biomedical Research Grant Collaborations.
J Biomed Inform, 46(1) 40-46 (2013)

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Nathan Goehring, Stephan W. Grill
Cell polarity: mechanochemical patterning.
Trends Cell Biol, 23(2) 72-80 (2013)

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Marco Nousch, Christian R. Eckmann
Translational Control in the Caenorhabditis elegans Germ Line.
Adv Exp Med Biol, 757 205-247 (2013)

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Felipe Mora-Bermúdez, Miguel Turrero García, Wieland B. Huttner
Stem cells: Neural stem cells in cerebral cortex development.
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A.M. Sykes, Wieland B. Huttner
Prominin-1 (CD133) and the cell biology of neural progenitors and their progeny.
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Iana M. Kalinina, Amitabha Nandi, Petrina Delivani, Mariola R. Chacón, Anna Klemm, Damien Ramunno-Johnson, Alexander Krull, Benjamin Lindner, Nenad Pavin, Iva M. Tolic-Norrelykke
Pivoting of microtubules around the spindle pole accelerates kinetochore capture.
Nat Cell Biol, 15(1) 82-87 (2013)

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Vineeth Surendranath, Mirko Theis, Bianca Habermann, Frank Buchholz
Designing efficient and specific endoribonuclease-prepared siRNAs.
Methods Mol Biol, 942 193-204 (2013)

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Vincent Fraisier, Amal Kasri, Stéphanie Miserey-Lenkei, Jean-Baptiste Sibarita, Deepak Nair, Adeline Mayeux, Sabine Bardin, Yusuke Toyoda, Ina Poser, Anton A Poznyakovskiy, Bruno Goud, Anthony Hyman, Ariane Dimitrov
C11ORF24 Is a Novel Type I Membrane Protein That Cycles between the Golgi Apparatus and the Plasma Membrane in Rab6-Positive Vesicles.
PLoS ONE, 8(12) Art. No. e82223 (2013)

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Monalisa Mishra, Elisabeth Knust
Analysis of the Drosophila compound eye with light and electron microscopy.
Methods Mol Biol, 935 161-182 (2013)

2012

Jerome Gilleron, Anja Zeigerer, Giovanni Marsico, Thierry Galvez, Marino Zerial
[Key role of Rab5: from endosome biogenesis to liver metabolism].
Med Sci (Paris), 28(12) 1041-1044 (2012)

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Melek Asli Kayserili, Dave T. Gerrard, Pavel Tomancak, Alex T. Kalinka
An excess of gene expression divergence on the x chromosome in Drosophila embryos: implications for the faster-x hypothesis.
PLoS Genet, 8(12) Art. No. e1003200 (2012)

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Per Widlund, Marija Podolski, Simone Reber, Joshua Alper, Marko Storch, Anthony Hyman, Jonathon Howard, David N. Drechsel
One-step purification of assembly-competent tubulin from diverse eukaryotic sources.
Mol Biol Cell, 23(22) 4393-4401 (2012)

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Kristina Uzunova, Billy T Dye, Hannelore Schutz, Rene Ladurner, Georg Petzold, Yusuke Toyoda, Marc A Jarvis, Nicholas G Brown, Ina Poser, Maria Novatchkova, Karl Mechtler, Anthony A. Hyman, Holger Stark, Brenda A Schulman, Jan-Michael Peters
APC15 mediates CDC20 autoubiquitylation by APC/C(MCC) and disassembly of the mitotic checkpoint complex.
Nat Struct Mol Biol, 19(11) 1116-1123 (2012)

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Elwy Okaz, Orlando Argüello-Miranda, Aliona Bogdanova, P K Vinod, Jesse J. Lipp, Zuzana Markova, Ievgeniia Zagoriy, Bela Novak, Wolfgang Zachariae
Meiotic Prophase Requires Proteolysis of M Phase Regulators Mediated by the Meiosis-Specific APC/C(Ama1).
Cell, 151(3) 603-618 (2012)

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Thierry Galvez, Jerome Gilleron, Marino Zerial, Gregory A O'Sullivan
SnapShot: Mammalian Rab proteins in endocytic trafficking.
Cell, 151(1) Art. No. 234-234.e2. (2012)

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Michael Groessl, H Luksch, Angela Rösen-Wolff, Andrej Shevchenko, Marc Gentzel
Profiling of the human monocytic cell secretome by quantitative label-free mass spectrometry identifies stimulus-specific cytokines and proinflammatory proteins.
Proteomics, 12(18) 2833-2842 (2012)

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Monalisa Mishra, Michaela Rentsch, Elisabeth Knust
Crumbs regulates polarity and prevents light-induced degeneration of the simple eyes of Drosophila, the ocelli
Eur J Cell Biol, 91(9) 706-716 (2012)

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Martin Bergert, Stanley Dinesh Chandradoss, Ravi Desai, Ewa Paluch
Cell mechanics control rapid transitions between blebs and lamellipodia during migration.
Proc Natl Acad Sci U.S.A., 109(36) 14434-14439 (2012)

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James Sáenz, Erdinc Sezgin, Petra Schwille, Kai Simons
Functional convergence of hopanoids and sterols in membrane ordering.
Proc Natl Acad Sci U.S.A., 109(35) 14236-14240 (2012)

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Christian Schröter, Saul Ares, Luis G. Morelli, Alina Isakova, Korneel Hens, Daniele Soroldoni, Martin Gajewski, Frank Jülicher, Sebastian J Maerkl, Bart Deplancke, Andrew C. Oates
Topology and dynamics of the zebrafish segmentation clock core circuit
PLoS Biol, 10(7) Art. No. e1001364 (2012)

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Andrej Vasilj, Marc Gentzel, Elke Ueberham, Rolf Gebhardt, Andrej Shevchenko
Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification
J Proteome Res, 11(7) 3680-3689 (2012)

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Volker Bormuth, Bert Nitzsche, Felix Ruhnow, Aniruddha Mitra, Marko Storch, Burkhard Rammner, Jonathon Howard, Stefan Diez
The highly processive kinesin-8, Kip3, switches microtubule protofilaments with a bias towards the left
Biophys J, 103(1 (Letter)) 4-6 (2012)

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Minna-Liisa Änkö, Karla M. Neugebauer
RNA-protein interactions in vivo: global gets specific
Trends Biochem Sci, 37(7) 255-262 (2012)

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Wilhelm Palm, Julio Sampaio, Marko Brankatschk, Maria Carvalho, Ali Mahmoud, Andrej Shevchenko, Suzanne Eaton
Lipoproteins in Drosophila melanogaster-Assembly, Function, and Influence on Tissue Lipid Composition
PLoS Genet, 8(7) Art. No. e1002828 (2012)

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Nicole Bieberstein, Fernando Carrillo Oesterreich, Korinna Straube, Karla M. Neugebauer
First exon length controls active chromatin signatures and transcription.
Cell Rep, 2(1) 62-68 (2012)

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Andreas Sagner, Matthias Merkel, Benoit Aigouy, Julia Gaebel, Marko Brankatschk, Frank Jülicher, Suzanne Eaton
Establishment of Global Patterns of Planar Polarity during Growth of the Drosophila Wing Epithelium.
Curr Biol, 22(14) 1296-1301 (2012)

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Maria Carvalho, Julio Sampaio, Wilhelm Palm, Marko Brankatschk, Suzanne Eaton, Andrej Shevchenko
Effects of diet and development on the Drosophila lipidome
Mol Syst Biol, 8 Art. No. 600 (2012)

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Julia Franziska Winter, Sebastian Höpfner, Kerstin Korn, Benjamin Farnung, Charles R. Bradshaw, Giovanni Marsico, Michael Volkmer, Bianca Habermann, Marino Zerial
Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity.
Nat Cell Biol, 14(7) 666-676 (2012)

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Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid, Jean-Yves Tinevez, Dan White, Volker Hartenstein, Kevin W Eliceiri, Pavel Tomancak, Albert Cardona
Fiji: an open-source platform for biological-image analysis.
Nat Methods, 9(7) 676-682 (2012)

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Ryuji Minasaki, Christian R. Eckmann
Subcellular specialization of multifaceted 3'end modifying nucleotidyltransferases.
Curr Opin Cell Biol, 24(3) 314-322 (2012)

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Mehdi Goudarzi, Torsten U Banisch, Mehrpouya B Mobin, Nicola Maghelli, Katsiaryna Tarbashevich, Ina Strate, Jana van den Berg, Heiko Blaser, Sabine Bandemer, Ewa Paluch, Jeroen Bakkers, Iva M. Tolic-Norrelykke, Erez Raz
Identification and Regulation of a Molecular Module for Bleb-Based Cell Motility.
Dev Cell, 23(1) 210-218 (2012)

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Katja Kapp, Johannes Siemens, Hans-Ulrich Häring, Reiner Lammers
Proteolytic processing of the protein tyrosine phosphatase α extracellular domain is mediated by ADAM17/TACE.
Eur J Cell Biol, 91(9) 687-693 (2012)

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Anja Zeigerer, Jerome Gilleron, Roman L Bogorad, Giovanni Marsico, Hidenori Nonaka, Sarah Seifert, Hila Epstein-Barash, Satya Kuchimanchi, Chang Geng Peng, Vera M Ruda, Perla Del Conte-Zerial, Jan G Hengstler, Yannis Kalaidzidis, Victor Koteliansky, Marino Zerial
Rab5 is necessary for the biogenesis of the endolysosomal system in vivo.
Nature, 485(7399) 465-470 (2012)

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Katharina Ross, Anna Sedello, Gabriele Putz Todd, Maciej Paszkowski-Rogacz, Alexander W. Bird, Li Ding, Tatyana Grinenko, Kira Behrens, Nina Hubner, Matthias Mann, Claudia Waskow, Carol Stocking, Frank Buchholz
Polycomb group ring finger 1 cooperates with Runx1 in regulating differentiation and self-renewal of hematopoietic cells.
Blood, 119(18) 4152-4161 (2012)

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Xinwang Cao, Michal Surma, Kai Simons
Polarized sorting and trafficking in epithelial cells
Cell Res, 22(5) 793-805 (2012)

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Nathan Goehring, Anthony A. Hyman
Organelle growth control through limiting pools of cytoplasmic components.
Curr Biol, 22(9) 330-339 (2012)

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Alex T. Kalinka, Pavel Tomancak
The evolution of early animal embryos: conservation or divergence?
Trends Ecol Evol, 27(7) 385-393 (2012)

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Lola Bajard, Andrew C. Oates
Breathe in and straighten your back: hypoxia, notch, and scoliosis
Cell, 149(2) 255-256 (2012)

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Cristina Aguirre-Portolés, Alexander W. Bird, Anthony A. Hyman, Marta Cañamero, Ignacio Pérez de Castro, Marcos Malumbres
Tpx2 controls spindle integrity, genome stability, and tumor development.
Cancer Res, 72(6) 1518-1528 (2012)

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Erdinc Sezgin, Ilya Levental, Michal Grzybek, Günter Schwarzmann, Veronika Mueller, Alf Honigmann, Vladimir N. Belov, Christian Eggeling, Uenal Coskun, Kai Simons, Petra Schwille
Partitioning, diffusion, and ligand binding of raft lipid analogs in model and cellular plasma membranes.
Biochim Biophys Acta, 1818(7) 1777-1784 (2012)

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Wilhelm Walter, Stefan Diez
Molecular motors: Myosin shifts into reverse gear
Nat Nanotechnol, 7(4 (News & Views)) 213-214 (2012)

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Li Ding, Ina Poser, Maciej Paszkowski-Rogacz, Frank Buchholz
From RNAi screens to molecular function in embryonic stem cells
Stem cell rev, 8(1) 32-42 (2012)

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Debojyoti Chakraborty, Dennis Kappei, Mirko Theis, Anja Nitzsche, Li Ding, Maciej Paszkowski-Rogacz, Vineeth Surendranath, Nicolas Berger, Herbert Schulz, Kathrin Saar, Norbert Hubner, Frank Buchholz
Combined RNAi and localization for functionally dissecting long non-coding RNAs
Nat Methods, 9(4) 360-362 (2012)

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Heiko Dückert, Verena Pries, Vivek Khedkar, Sascha Menninger, Hanna Bruss, Alexander W. Bird, Zoltan Maliga, Andreas Brockmeyer, Petra Janning, Anthony A. Hyman, Stefan Grimme, Markus Schürmann, Hans Preut, Katja Hübel, Slava Ziegler, Kamal Kumar, Herbert Waldmann
Natural product-inspired cascade synthesis yields modulators of centrosome integrity.
Nat Chem Biol, 8(2) 179-184 (2012)

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Wilhelm Walter, Stefan Diez
Molecular motors: A staggering giant.
Nature, 482(7383) 44-45 (2012)

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A new approach to manipulate the fate of single neural stem cells in tissue.
Nat Neurosci, 15(2) 329-337 (2012)

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Iva Kelava, Isabel Reillo, Ayako Y Murayama, Alex T. Kalinka, Denise Stenzel, Pavel Tomancak, Fumio Matsuzaki, Cécile Lebrand, Erika Sasaki, Jens C Schwamborn, Hideyuki Okano, Wieland B. Huttner, Víctor Borrell
Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus.
Cereb Cortex, 22(2) 469-481 (2012)

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Sophie Ayciriex, Marina Le Guédard, Nadine Camougrand, Gisèle Velours, Mario Schoene, Sebastien Leone, Valerie Wattelet-Boyer, Jean-William Dupuy, Andrej Shevchenko, Jean-Marie Schmitter, René Lessire, Jean-Jacques Bessoule, Eric Testet
YPR139c/LOA1 encodes a novel lysophosphatidic acid acyltransferase associated with lipid droplets and involved in TAG homeostasis.
Mol Biol Cell, 23(2) 233-246 (2012)

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Albert Cardona, Stephan Saalfeld, Johannes Schindelin, Ignacio Arganda-Carreras, Stephan Preibisch, Mark Longair, Pavel Tomancak, Volker Hartenstein, Rodney J Douglas
TrakEM2 Software for Neural Circuit Reconstruction.
PLoS ONE, 7(6) Art. No. e38011 (2012)

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Martin P Stewart, Yusuke Toyoda, Anthony A. Hyman, Daniel J. Müller
Tracking mechanics and volume of globular cells with atomic force microscopy using a constant-height clamp.
Nat Protoc, 7(1) 143-154 (2012)

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Minna-Liisa Änkö, Michaela Müller-McNicoll, Holger Brandl, Tomaz Curk, Crtomir Gorup, Ian Henry, Jernej Ule, Karla M. Neugebauer
The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.
Genome Biol, 13(3) Art. No. R17 (2012)

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Aparna K Sapra, Fernando Carrillo Oesterreich, Marta Pabis, Imke Listerman, Nicole Bieberstein, Karla M. Neugebauer
Splicing Factor ChIP and ChRIP: Detection of splicing and splicing factors at genes by chromatin immunoprecipitation
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Till Korten, Wolfgang Birnbaum, Dirk Kuckling, Stefan Diez
Selective Control of Gliding Microtubule Populations.
Nano Lett, 12(1) 348-353 (2012)

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Mathias J. Gerl, Julio Sampaio, Lucie Kalvodova, Jean-Marc Verbavatz, Andrej Shevchenko, Cornelia Schroeder, Kai Simons
Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane
J Cell Biol, 196(2) 213-221 (2012)

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Luis M B B Estronca, Jorge Santos Da Silva, Julio Sampaio, Andrej Shevchenko, Paul Verkade, Alfin D N Vaz, Winchil Vaz, Otilia V Vieira
Molecular etiology of atherogenesis--in vitro induction of lipidosis in macrophages with a new LDL model
PLoS ONE, 7(4) Art. No. e34822 (2012)

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Ronny Herzog, Kai Schuhmann, Dominik Schwudke, Julio Sampaio, Stefan R. Bornstein, Michael Schroeder, Andrej Shevchenko
LipidXplorer: A Software for Consensual Cross-Platform Lipidomics.
PLoS ONE, 7(1) Art. No. e29851 (2012)

---
Michal Surma, Christian Klose, Kai Simons
Lipid-dependent protein sorting at the trans-Golgi network
Biochim Biophys Acta, 1821(8, SI) 1059-1067 (2012)

---
Carolina Tropini, Elizabeth A Roth, Marija Zanic, Melissa Gardner, Jonathon Howard
Islands containing slowly hydrolyzable GTP analogs promote microtubule rescues.
PLoS ONE, 7(1) Art. No. e30103 (2012)

---
Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak, Stephan Saalfeld
ImgLib2 – Generic Image Processing in Java
Bioinformatics, 28(22) 3009-3011 (2012)

---
Cihan Erkut, Sider Penkov, Karim Fahmy, Teymuras V. Kurzchalia
How worms survive desiccation: Trehalose pro water.
Worm, 1(1) 61-65 (2012)

---
Alexander W. Bird, Axel Erler, Jun Fu, Jean-Karim Hériché, Marcello Maresca, Youming Zhang, Anthony A. Hyman, A Francis Stewart
High-efficiency counterselection recombineering for site-directed mutagenesis in bacterial artificial chromosomes.
Nat Methods, 9(1) 103-109 (2012)

---
Massimilano Scolz, Per Widlund, Silvano Piazza, Debora Rosa Bublik, Simone Reber, Leticia Y Peche, Yari Ciani, Nina Hubner, Mayumi Isokane, Martin Monte, Jan Ellenberg, Anthony Hyman, Claudio Schneider, Alexander W. Bird
GTSE1 is a microtubule plus-end tracking protein that regulates EB1-dependent cell migration.
PLoS ONE, 7(12) Art. No. e51259 (2012)

---
Christian Klose, Michal Surma, Mathias J. Gerl, Felix Meyenhofer, Andrej Shevchenko, Kai Simons
Flexibility of a Eukaryotic Lipidome – Insights from Yeast Lipidomics
PLoS ONE, 7(4) Art. No. e35063 (2012)

---
Michaela Wilsch-Bräuninger, Jula Peters, Judith Paridaen, Wieland B. Huttner
Basolateral rather than apical primary cilia on neuroepithelial cells committed to delamination.
Development, 139(1) 95-105 (2012)

---
Aurelie Tomczak, Jana Sontheimer, David N. Drechsel, Rainer Hausdorf, Marc Gentzel, Andrej Shevchenko, Stefanie Eichler, Karim Fahmy, Frank Buchholz, Maria Teresa Pisabarro
3D profile-based approach to proteome-wide discovery of novel human chemokines
PLoS ONE, 7(5) Art. No. e36151 (2012)

2011

Simone Reber, Anthony A. Hyman
Samurai sword sets spindle size.
Cell, 147(6) 1224-1225 (2011)

---
Hermann-Josef Kaiser, Michal Surma, Ilya Levental, Michal Grzybek, Robin W. Klemm, Daniel Lingwood, Kai Simons
Molecular convergence of bacterial and eukaryotic surface order.
J Biol Chem, 286(47) 40631-40637 (2011)

---
Louis Leung, Abigail Klopper, Stephan W. Grill, William A Harris, Caren Norden
Apical migration of nuclei during G2 is a prerequisite for all nuclear motion in zebrafish neuroepithelia.
Development, 138(22) 5003-5013 (2011)

---
Nathan Goehring, Philipp Khuc Trong, Justin Bois, Debanjan Chowdhury, Ernesto M Nicola, Anthony A. Hyman, Stephan W. Grill
Polarization of PAR Proteins by Advective Triggering of a Pattern-Forming System.
Science, 334(6059) 1137-1141 (2011)

---
Marcus Braun, Zdenek Lansky, Gero Fink, Felix Ruhnow, Stefan Diez, Marcel E Janson
Adaptive braking by Ase1 prevents overlapping microtubules from sliding completely apart.
Nat Cell Biol, 13(10) 1259-1264 (2011)

---
Till Korten, Bert Nitzsche, Christopher Gell, Felix Ruhnow, Cecile Leduc, Stefan Diez
Fluorescence imaging of single Kinesin motors on immobilized microtubules.
Methods Mol Biol, 783 121-137 (2011)

---
Jakub Sedzinski, Mate Biro, Annelie Oswald, Jean-Yves Tinevez, Guillaume Salbreux, Ewa Paluch
Polar actomyosin contractility destabilizes the position of the cytokinetic furrow.
Nature, 476(7361) 462-466 (2011)

---
Martin P Stewart, Yusuke Toyoda, Anthony A. Hyman, Daniel J. Müller
Force probing cell shape changes to molecular resolution.
Trends Biochem Sci, 36(8) 444-450 (2011)

---
Jonathon Howard, Stephan W. Grill, Justin Bois
Turing's next steps: the mechanochemical basis of morphogenesis.
Nat Rev Mol Cell Biol, 12(6) 400-406 (2011)

---
Nathan Goehring, Carsten Hoege, Stephan W. Grill, Anthony A. Hyman
PAR proteins diffuse freely across the anterior-posterior boundary in polarized C. elegans embryos.
J Cell Biol, 193(3) 583-594 (2011)

---
Alex T. Kalinka, Pavel Tomancak
linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.
Bioinformatics, 27(14) 2011-2012 (2011)

---
Lis Jakobsen, Katja Vanselow, Marie Skogs, Yusuke Toyoda, Emma Lundberg, Ina Poser, Lasse G Falkenby, Martin Bennetzen, Jens Westendorf, Erich A Nigg, Mathias Uhlen, Anthony A. Hyman, Jens S Andersen
Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods.
EMBO J, 30(8) 1520-1535 (2011)

---
Fernando Carrillo Oesterreich, Nicole Bieberstein, Karla M. Neugebauer
Pause locally, splice globally.
Trends Cell Biol, 21(6, SI) 328-335 (2011)

---
Clifford Brangwynne, Timothy J. Mitchison, Anthony A. Hyman
Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.
Proc Natl Acad Sci U.S.A., 108(11) 4334-4339 (2011)

---
Stefanie Redemann, Siegfried Schloissnig, Susanne Ernst, Andrei I. Pozniakovsky, Swathi Ayloo, Anthony A. Hyman, Henrik Bringmann
Codon adaptation-based control of protein expression in C. elegans.
Nat Methods, 8(3) 250-252 (2011)

---
Per Widlund, Jeffrey H. Stear, Andrei I. Pozniakovsky, Marija Zanic, Simone Reber, Gary J. Brouhard, Anthony A. Hyman, Jonathon Howard
XMAP215 polymerase activity is built by combining multiple tubulin-binding TOG domains and a basic lattice-binding region.
Proc Natl Acad Sci U.S.A., 108(7) 2741-2746 (2011)

---
Antonio Domingues, Karla M. Neugebauer, Robert Fern
Identification of four functional NR3B isoforms in developing white matter reveals unexpected diversity among glutamate receptors.
J Neurochem, 117(3) 449-460 (2011)

---
Justin Bois, Frank Jülicher, Stephan W. Grill
Pattern formation in active fluids
Phys Rev Lett, 106(2) Art. No. 028103 (2011)

---
Martin P Stewart, Jonne H. Helenius, Yusuke Toyoda, Subramanian Ramanathan, Daniel J. Müller, Anthony A. Hyman
Hydrostatic pressure and the actomyosin cortex drive mitotic cell rounding.
Nature, 469(7329) 226-230 (2011)

---
Nicola Maghelli, Iva M. Tolic-Norrelykke
Laser ablation of the microtubule cytoskeleton: setting up and working with an ablation system.
Methods Mol Biol, 777 261-271 (2011)

2010

Alex T. Kalinka, Karolina M Varga, Dave T. Gerrard, Stephan Preibisch, David L. Corcoran, Julia Jarrells, Uwe Ohler, Casey M. Bergman, Pavel Tomancak
Gene expression divergence recapitulates the developmental hourglass model.
Nature, 468(7325) 811-814 (2010)

---
Sider Penkov, Fanny Mende, Vyacheslav Zagoriy, Cihan Erkut, René Martin, Ulrike Pässler, Kai Schuhmann, Dominik Schwudke, Margit Gruner, Jana Mäntler, Thomas Müller-Reichert, Andrej Shevchenko, Hans-Joachim Knölker, Teymuras V. Kurzchalia
Maradolipids: Diacyltrehalose Glycolipids Specific to Dauer Larva in Caenorhabditis elegans.
Angew Chem Int Ed Engl, 49(49) 9430-9435 (2010)

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Maria Carvalho, Dominik Schwudke, Julio Sampaio, Wilhelm Palm, Isabelle Riezman, Gautam Dey, Gagan D Gupta, Satyajit Mayor, Howard Riezman, Andrej Shevchenko, Teymuras V. Kurzchalia, Suzanne Eaton
Survival strategies of a sterol auxotroph.
Development, 137(21) 3675-3685 (2010)

---
Nathan W. Goehring, Debanjan Chowdhury, Anthony A. Hyman, Stephan W. Grill
FRAP analysis of membrane-associated proteins: lateral diffusion and membrane-cytoplasmic exchange
Biophys J, 99(8) 2443-2452 (2010)

---
Abigail Klopper, Gabriel Krens, Stephan W. Grill, Carl-Philipp Heisenberg
Finite-size corrections to scaling behavior in sorted cell aggregates.
Eur Phys J E Soft Matter, 33(2) 99-103 (2010)

---
Martina Huranová, Ivan Ivani, Ales Benda, Ina Poser, Yehuda Brody, Martin Hof, Yaron Shav-Tal, Karla M. Neugebauer, David Stanĕk
The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells.
J Cell Biol, 191(1) 75-86 (2010)

---
Ilya Levental, Daniel Lingwood, Michal Grzybek, Uenal Coskun, Kai Simons
Palmitoylation regulates raft affinity for the majority of integral raft proteins
Proc Natl Acad Sci U.S.A., 107(51) 22050-22054 (2010)

---
Rashmi Mishra, Michal Grzybek, Toshiro Niki, Mitsuomi Hirashima, Kai Simons
Galectin-9 trafficking regulates apical-basal polarity in Madin-Darby canine kidney epithelial cells
Proc Natl Acad Sci U.S.A., 107(41) 17633-17638 (2010)

---
Mirjam Mayer, Martin Depken, Justin Bois, Frank Jülicher, Stephan W. Grill
Anisotropies in cortical tension reveal the physical basis of polarizing cortical flows.
Nature, 467(7315) 617-621 (2010)

---
Cecile Leduc, Nenad Pavin, Frank Jülicher, Stefan Diez
Collective Behavior of Antagonistically Acting Kinesin-1 Motors
Phys Rev Lett, 105(12) Art. No. 128103 (2010)

---
Benoit Aigouy, Reza Farhadifar, Douglas B Staple, Andreas Sagner, Jens-Christian Röper, Frank Jülicher, Suzanne Eaton
Cell flow reorients the axis of planar polarity in the wing epithelium of Drosophila.
Cell, 142(5) 773-786 (2010)

---
Christian Klose, Christer S. Ejsing, Anna J. Garcia-Sáez, Hermann-Josef Kaiser, Julio Sampaio, Michal Surma, Andrej Shevchenko, Petra Schwille, Kai Simons
Yeast lipids can phase-separate into micrometer-scale membrane domains
J Biol Chem, 285(39) 30224-30232 (2010)

---
Elena Taverna, Wieland B. Huttner
Neural progenitor nuclei IN motion.
Neuron, 67(6) 906-914 (2010)

---
Jeremy N. Pulvers, Jaroslaw Bryk, Jennifer L. Fish, Michaela Wilsch-Bräuninger, Yoko Arai, Dora Schreier, Ronald Naumann, Jussi Helppi, Bianca Habermann, Johannes Vogt, Robert Nitsch, Attila Toth, Wolfgang Enard, Svante Pääbo, Wieland B. Huttner
Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline.
Proc Natl Acad Sci U.S.A., 107(38) 16595-16600 (2010)

---
Minna-Liisa Änkö, Karla M. Neugebauer
Long noncoding RNAs add another layer to pre-mRNA splicing regulation.
Mol Cell, 39(6) 833-834 (2010)

---
Michael H A Schmitz, Michael Held, Veerle Janssens, James R A Hutchins, Otto Hudecz, Elitsa Ivanova, Jozef Goris, Laura Trinkle-Mulcahy, Angus I Lamond, Ina Poser, Anthony A. Hyman, Karl Mechtler, Jan-Michael Peters, Daniel W Gerlich
Live-cell imaging RNAi screen identifies PP2A-B55alpha and importin-beta1 as key mitotic exit regulators in human cells.
Nat Cell Biol, 12(9) 886-893 (2010)

---
Till Korten, Alf Månsson, Stefan Diez
Towards the Application of Cytoskeletal Motor Proteins in Molecular Detection and Diagnostic Devices
Curr Opin Biotechnol, 21(4) 477-488 (2010)

---
Stefanie Redemann, Jacques Pecreaux, Nathan W. Goehring, Khaled Khairy, Ernst H K Stelzer, Anthony A. Hyman, Jonathon Howard
Membrane invaginations reveal cortical sites that pull on mitotic spindles in one-cell C. elegans embryos.
PLoS ONE, 5(8) Art. No. e12301 (2010)

---
Vyacheslav Zagoriy, Vitali Matyash, Teymuras V. Kurzchalia
Long-chain O-ascarosyl-alkanediols are constitutive components of Caenorhabditis elegans but do not induce dauer larva formation.
Chem Biodivers, 7(8) 2016-2022 (2010)

---
Marko Brankatschk, Suzanne Eaton
Lipoprotein particles cross the blood-brain barrier in Drosophila.
J Neurosci, 30(31) 10441-10447 (2010)

---
Ilya Levental, Michal Grzybek, Kai Simons
Greasing their way: lipid modifications determine protein association with membrane rafts
Biochemistry, 49(30) 6305-6316 (2010)

---
Akin Akinc, William Querbes, Soma De, June Qin, Maria Frank-Kamenetsky, K Narayanannair Jayaprakash, Muthusamy Jayaraman, Kallanthottathil G Rajeev, William L Cantley, J Robert Dorkin, James S Butler, Liuliang Qin, Timothy Racie, Andrew Sprague, Eugenio Fava, Anja Zeigerer, Michael J Hope, Marino Zerial, Dinah W Y Sah, Kevin Fitzgerald, Mark A Tracy, Muthiah Manoharan, Victor Koteliansky, Antonin de Fougerolles, Martin A Maier
Targeted delivery of RNAi therapeutics with endogenous and exogenous ligand-based mechanisms.
Mol Ther, 18(7) 1357-1364 (2010)

---
Carsten Hoege, Alexandru T. Constantinescu, Anne Schwager, Nathan W. Goehring, Prateek Kumar, Anthony A. Hyman
LGL can partition the cortex of one-cell Caenorhabditis elegans embryos into two domains.
Curr Biol, 20(14) 1296-1303 (2010)

---
Daiki Umetsu, Christian Dahmann
Compartment boundaries: Sorting cells with tension.
Fly, 4(3) 241-245 (2010)

---
Mikolaj Slabicki, Mirko Theis, Dragomir Krastev, Sergey Samsonov, Emeline Mundwiller, Magno Junqueira, Maciej Paszkowski-Rogacz, Joan Teyra, Anne-Kristin Heninger, Ina Poser, Fabienne Prieur, Jérémy Truchetto, Christian Confavreux, Cécilia Marelli, Alexandra Durr, Jean Philippe Camdessanche, Alexis Brice, Andrej Shevchenko, Maria Teresa Pisabarro, Giovanni Stevanin, Frank Buchholz
A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia.
PLoS Biol, 8(6) Art. No. e1000408 (2010)

---
Simone Fietz, Iva Kelava, Johannes Vogt, Michaela Wilsch-Bräuninger, Denise Stenzel, Jennifer L. Fish, Denis Corbeil, Axel Riehn, Wolfgang Distler, Robert Nitsch, Wieland B. Huttner
OSVZ progenitors of human and ferret neocortex are epithelial-like and expand by integrin signaling.
Nat Neurosci, 13(6) 690-699 (2010)

---
Denis Corbeil, Anne-Marie Marzesco, Michaela Wilsch-Bräuninger, Wieland B. Huttner
The intriguing links between prominin-1 (CD133), cholesterol-based membrane microdomains, remodeling of apical plasma membrane protrusions, extracellular membrane particles, and (neuro)epithelial cell differentiation.
FEBS Lett, 584(9) 1659-1664 (2010)

---
Nina C. Hubner, Alexander W. Bird, Jürgen Cox, Bianca Splettstoesser, Peter Bandilla, Ina Poser, Anthony A. Hyman, Matthias Mann
Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions.
J Cell Biol, 189(4) 739-754 (2010)

---
Uenal Coskun, Kai Simons
Membrane rafting: from apical sorting to phase segregation.
FEBS Lett, 584(9) 1685-1693 (2010)

---
Sven Vogel, Nenad Pavin, Nicola Maghelli, Frank Jülicher, Iva M. Tolic-Norrelykke
Microtubules and motor proteins: Mechanically regulated self-organization in vivo
Eur Phys J Spec Top, 178(1) 57-69 (2010)

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James R A Hutchins, Yusuke Toyoda, Björn Hegemann, Ina Poser, Jean-Karim Hériché, Martina M Sykora, Martina Augsburg, Otto Hudecz, Bettina A Buschhorn, Jutta Bulkescher, Christian Conrad, David Comartin, Alexander Schleiffer, Mihail Sarov, Andrei I. Pozniakovsky, Mikolaj Slabicki, Siegfried Schloissnig, Ines Steinmacher, Marit Leuschner, Andrea Ssykor, Steffen Lawo, Laurence Pelletier, Holger Stark, Kim Nasmyth, Jan Ellenberg, Richard Durbin, Frank Buchholz, Karl Mechtler, Anthony A. Hyman, Jan-Michael Peters
Systematic analysis of human protein complexes identifies chromosome segregation proteins.
Science, 328(5978) 593-599 (2010)

---
Beate Neumann, Thomas Walter, Jean-Karim Hériché, Jutta Bulkescher, Holger Erfle, Christian Conrad, Phill Rogers, Ina Poser, Michael Held, Urban Liebel, Cihan Cetin, Frank Sieckmann, Gregoire Pau, Rolf Kabbe, Annelie Wünsche, Venkata Satagopam, Michael H A Schmitz, Catherine Chapuis, Daniel W Gerlich, Reinhard Schneider, Roland Eils, Wolfgang Huber, Jan-Michael Peters, Anthony A. Hyman, Richard Durbin, Rainer Pepperkok, Jan Ellenberg
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.
Nature, 464(7289) 721-727 (2010)

---
Marc Lenoir, Uenal Coskun, Michal Grzybek, Xinwang Cao, Sabine Barbara Buschhorn, Jonathan James, Kai Simons, Michael Overduin
Structural basis of wedging the Golgi membrane by FAPP pleckstrin homology domains.
EMBO Rep, 11(4) 279-284 (2010)

---
Abigail Klopper, Justin Bois, Stephan W. Grill
Influence of secondary structure on recovery from pauses during early stages of RNA transcription.
Phys Rev E, 81(3 Pt 1) Art. No. 030904 (2010)

---
Claudio Collinet, Martin Stöter, Charles R. Bradshaw, Nikolay Samusik, Jochen Rink, Denise Kenski, Bianca Habermann, Frank Buchholz, Robert Henschel, Matthias S Mueller, Wolfgang E Nagel, Eugenio Fava, Yannis Kalaidzidis, Marino Zerial
Systems survey of endocytosis by multiparametric image analysis.
Nature, 464(7286) 243-249 (2010)

---
Michael Stiess, Nicola Maghelli, Lukas C Kapitein, Susana Gomis-Rüth, Michaela Wilsch-Bräuninger, Casper C Hoogenraad, Iva M. Tolic-Norrelykke, Frank Bradke
Axon extension occurs independently of centrosomal microtubule nucleation.
Science, 327(5966) 704-707 (2010)

---
Garrett Greenan, Clifford Brangwynne, Steffen Jaensch, Joebin Gharakhani, Frank Jülicher, Anthony A. Hyman
Centrosome size sets mitotic spindle length in Caenorhabditis elegans embryos.
Curr Biol, 20(4) 353-358 (2010)

---
Bert Nitzsche, Volker Bormuth, Corina Bräuer, Jonathon Howard, Leonid Ionov, Jacob W. J. Kerssemakers, Till Korten, Cecile Leduc, Felix Ruhnow, Stefan Diez
Studying kinesin motors by optical 3D-nanometry in gliding motility assays.
Methods Cell Biol, 95 247-271 (2010)

---
Denis Corbeil, Anne-Marie Marzesco, Christine A. Fargeas, Wieland B. Huttner
Prominin-1: a distinct cholesterol-binding membrane protein and the organisation of the apical plasma membrane of epithelial cells.
Subcell Biochem, 51 399-423 (2010)

---
Christopher Gell, Volker Bormuth, Gary J. Brouhard, Daniel N. Cohen, Stefan Diez, Claire Friel, Jonne Helenius, Bert Nitzsche, Heike Petzold, Jan Ribbe, Erik Schäffer, Jeffrey H. Stear, Anastasiya Trushko, Vladimir Varga, Per Widlund, Marija Zanic, Jonathon Howard
Microtubule dynamics reconstituted in vitro and imaged by single-molecule fluorescence microscopy.
Methods Cell Biol, 95 221-245 (2010)

---
Daniel Lingwood, Kai Simons
Lipid rafts as a membrane-organizing principle.
Science, 327(5961) 46-50 (2010)