publications before 2001
| 2012 |
| Knaust, Andrea; Shevchenko, Andrej; Shevchenko, Anna |
| Horizontal carryover of proteins on one-dimensional polyacrylamide gels may jeopardize gel-enhanced liquid chromatography mass spectrometry proteomic interpretations. |
| Anal. Biochem., 421, no. 2, pp. 779-781, (2012) |
| Ayciriex, Sophie; Guédard, Marina Le; Camougrand, Nadine; Velours, Gisèle; Schoene, Mario; Leone, Sebastien; Wattelet-Boyer, Valerie; Dupuy, Jean-William; Shevchenko, Andrej; Schmitter, Jean-Marie; Lessire, René; Bessoule, Jean-Jacques; Testet, Eric |
| YPR139c/LOA1 encodes a novel lysophosphatidic acid acyltransferase associated with lipid droplets and involved in TAG homeostasis. |
| Mol. Biol. Cell, 23, no. 2, pp. 233-246, (2012) |
| Schuhmann, Kai; Almeida, Reinaldo; Baumert, Mark; Herzog, Ronny; Bornstein, Stefan R.; Shevchenko, Andrej |
| Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes. |
| Journal of mass spectrometry : JMS, 47, no. 1, pp. 96-104, (2012) |
| Gerl, Mathias J.; Sampaio, Julio; Kalvodova, Lucie; Verbavatz, Jean-Marc; Shevchenko, Andrej; Schroeder, Cornelia; Simons, Kai |
| Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane |
| J. Cell Biol., 196, no. 2, pp. 213-221, (2012) |
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| Herzog, Ronny; Schuhmann, Kai; Schwudke, Dominik; Sampaio, Julio; Bornstein, Stefan R.; Schroeder, Michael; Shevchenko, Andrej |
| LipidXplorer: A Software for Consensual Cross-Platform Lipidomics. |
| PLoS ONE, 7, no. 1, pp. 29851-29851, (2012) |
| Kuerschner, Lars; Richter, Doris; Hannibal-Bach, Hans Kristian; Gaebler, Anne; Shevchenko, Andrej; Ejsing, Christer S.; Thiele, Christoph |
| Exogenous ether lipids predominantly target mitochondria. |
| PLoS ONE, 7, no. 2, pp. 31342-31342, (2012) |
| 2011 |
| Edelson-Averbukh, Marina; Shevchenko, Andrej; Pipkorn, Rüdiger; Lehmann, Wolf D |
| Discrimination between peptide O-sulfo- and O-phosphotyrosine residues by negative ion mode electrospray tandem mass spectrometry. |
| J. Am. Soc. Mass Spectrom., 22, no. 12, pp. 2256-2268, (2011) |
| Schwudke, Dominik; Schuhmann, Kai; Herzog, Ronny; Bornstein, Stefan R.; Shevchenko, Andrej |
| Shotgun lipidomics on high resolution mass spectrometers. |
| Cold Spring Harb Perspect Biol, 3, no. 9, (2011) |
| Schuhmann, Kai; Herzog, Ronny; Schwudke, Dominik; Metelmann-Strupat, Wolfgang; Bornstein, Stefan R.; Shevchenko, Andrej |
| Bottom-up shotgun lipidomics by higher energy collisional dissociation on LTQ Orbitrap mass spectrometers. |
| Anal. Chem., 83, no. 14, pp. 5480-5487, (2011) |
| Krastev, Dragomir; Slabicki, Mikolaj; Paszkowski-Rogacz, Maciej; Hubner, Nina C; Junqueira, Magno; Shevchenko, Andrej; Mann, Matthias; Neugebauer, Karla M.; Buchholz, Frank |
| A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly. |
| Nat. Cell Biol., 13, no. 7, pp. 809-818, (2011) |
| Moessinger, Christine; Kuerschner, Lars; Spandl, Johanna; Shevchenko, Andrej; Thiele, Christoph |
| Human lysophosphatidylcholine acyltransferases 1 and 2 are located in lipid droplets where they catalyze the formation of phosphatidylcholine. |
| J. Biol. Chem., 286, no. 24, pp. 21330-21339, (2011) |
| Kumagai, Akiko; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| Direct regulation of Treslin by cyclin-dependent kinase is essential for the onset of DNA replication. |
| J. Cell Biol., 193, no. 6, pp. 995-1007, (2011) |
| Balbuena, Tiago S.; Jo, Leonardo; Pieruzzi, Fernanda P; Dias, Leonardo L C; Silveira, Vanildo; Santa-Catarina, Claudete; Junqueira, Magno; Thelen, Jay J; Shevchenko, Andrej; Floh, Eny I S |
| Differential proteome analysis of mature and germinated embryos of Araucaria angustifolia. |
| Phytochemistry, 72, no. 4-5, pp. 302-311, (2011) |
| Spirin, Victor; Shpunt, Alexander; Seebacher, Jan; Gentzel, Marc; Shevchenko, Andrej; Gygi, Steven; Sunyaev, Shamil |
| Assigning spectrum-specific P-values to protein identifications by mass spectrometry. |
| Bioinformatics, 27, no. 8, pp. 1128-1134, (2011) |
| Danckwardt, Sven; Gantzert, Anne-Susan; Macher-Goeppinger, Stephan; Probst, Hans Christian; Gentzel, Marc; Wilm, Matthias; Gröne, Hermann-Josef; Schirmacher, Peter; Hentze, Matthias W.; Kulozik, Andreas E |
| p38 MAPK controls prothrombin expression by regulated RNA 3' end processing. |
| Mol. Cell, 41, no. 3, pp. 298-310, (2011) |
| Sampaio, Julio; Klose, Christian; Simons, Kai; Gerl, Mathias J.; Ejsing, Christer S.; Shevchenko, Andrej |
| Membrane lipidome of an epithelial cell line |
| Proc. Natl. Acad. Sci. U.S.A., 108, no. 5, pp. 1903-1907, (2011) |
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| Herzog, Ronny; Schwudke, Dominik; Schuhmann, Kai; Sampaio, Julio; Bornstein, Stefan R.; Schroeder, Michael; Shevchenko, Andrej |
| A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. |
| Genome Biol., 12, no. 1, (2011) |
| Fernandez, Céline; Schuhmann, Kai; Herzog, Ronny; Fielding, Barbara; Frayn, Keith; Shevchenko, Andrej; James, Peter; Holm, Cecilia; Ström, Kristoffer |
| Altered desaturation and elongation of fatty acids in hormone-sensitive lipase null mice. |
| PLoS ONE, 6, no. 6, (2011) |
| 2010 |
| Penkov, Sider; Mende, Fanny; Zagoriy, Vyacheslav; Erkut, Cihan; Martin, René; Pässler, Ulrike; Schuhmann, Kai; Schwudke, Dominik; Gruner, Margit; Mäntler, Jana; Müller-Reichert, Thomas; Shevchenko, Andrej; Knölker, Hans-Joachim; Kurzchalia, Teymuras V. |
| Maradolipids: Diacyltrehalose Glycolipids Specific to Dauer Larva in Caenorhabditis elegans. |
| Angew. Chem. Int. Ed. Engl., 49, no. 49, pp. 9430-9435, (2010) |
| Download PDF |
| Carvalho, Maria; Schwudke, Dominik; Sampaio, Julio; Palm, Wilhelm; Riezman, Isabelle; Dey, Gautam; Gupta, Gagan D; Mayor, Satyajit; Riezman, Howard; Shevchenko, Andrej; Kurzchalia, Teymuras V.; Eaton, Suzanne |
| Survival strategies of a sterol auxotroph. |
| Development, 137, no. 21, pp. 3675-3685, (2010) |
| Download PDF |
| Feike, Ann Caroline; Rachor, Klara; Gentzel, Marc; Schambony, Alexandra |
| Wnt5a/Ror2-induced upregulation of xPAPC requires xShcA. |
| Biochem. Biophys. Res. Commun., 400, no. 4, pp. 500-506, (2010) |
| Download PDF |
| Klose, Christian; Ejsing, Christer S.; Garcia-Sáez, Anna J.; Kaiser, Hermann-Josef; Sampaio, Julio; Surma, Michal; Shevchenko, Andrej; Schwille, Petra; Simons, Kai |
| Yeast lipids can phase-separate into micrometer-scale membrane domains |
| J. Biol. Chem., 285, no. 39, pp. 30224-30232, (2010) |
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| Shevchenko, Andrej; Simons, Kai |
| Lipidomics: coming to grips with lipid diversity. |
| Nat. Rev. Mol. Cell Biol., 11, no. 8, pp. 593-598, (2010) |
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| Reich, Adam; Schwudke, Dominik; Meurer, Michael; Lehmann, Bodo; Shevchenko, Andrej |
| Lipidome of narrow-band ultraviolet B irradiated keratinocytes shows apoptotic hallmarks. |
| Exp. Dermatol., 19, no. 8, pp. 103-110, (2010) |
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| Eke, Iris; Koch, Ulrike; Hehlgans, Stephanie; Sandfort, Veit; Stanchi, Fabio; Zips, Daniel; Baumann, Michael; Shevchenko, Anna; Pilarsky, Christian; Haase, Michael; Baretton, Gustavo; Calleja, Véronique; Larijani, Banafshé; Fässler, Reinhard; Cordes, Nils |
| PINCH1 regulates Akt1 activation and enhances radioresistance by inhibiting PP1alpha. |
| J. Clin. Invest., 120, no. 7, pp. 2516-2527, (2010) |
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| Slabicki, Mikolaj; Theis, Mirko; Krastev, Dragomir; Samsonov, Sergey; Mundwiller, Emeline; Junqueira, Magno; Paszkowski-Rogacz, Maciej; Teyra, Joan; Heninger, Anne-Kristin; Poser, Ina; Prieur, Fabienne; Truchetto, Jérémy; Confavreux, Christian; Marelli, Cécilia; Durr, Alexandra; Camdessanche, Jean Philippe; Brice, Alexis; Shevchenko, Andrej; Pisabarro, Maria Teresa; Stevanin, Giovanni; Buchholz, Frank |
| A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia. |
| PLoS Biol., 8, no. 6, pp. 1000408-1000408, (2010) |
| Download PDF |
| Sinha, Indranil; Buchanan, Luke; Rönnerblad, Michelle; Bonilla, Carolina; Durand-Dubief, Mickaël; Shevchenko, Andrej; Grunstein, Michael; Stewart, A. Francis; Ekwall, Karl |
| Genome-wide mapping of histone modifications and mass spectrometry reveal H4 acetylation bias and H3K36 methylation at gene promoters in fission yeast |
| Epigenomics, 2, no. 3, pp. 377-393, (2010) |
| Breslow, David K.; Collins, Sean R.; Bodenmiller, Bernd; Aebersold, Ruedi; Simons, Kai; Shevchenko, Andrej; Ejsing, Christer S.; Weissman, Jonathan S. |
| Orm family proteins mediate sphingolipid homeostasis |
| Nature, 463, no. 7284, pp. 1048-1053, (2010) |
| Download PDF |
| Gache, Vincent; Waridel, Patrice; Winter, Christof; Juhem, Aurelie; Schroeder, Michael; Shevchenko, Andrej; Popov, Andrei V. |
| Xenopus meiotic microtubule-associated interactome. |
| PLoS ONE, 5, no. 2, pp. 9248-9248, (2010) |
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| Kumagai, Akiko; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| Treslin collaborates with TopBP1 in triggering the initiation of DNA replication. |
| Cell, 140, no. 3, pp. 349-359, (2010) |
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| 2009 |
| Junqueira, Magno |
| Systematic characterization of mammalian protein complexes by shotgun liquid chromatography tandem mass spectrometry |
| [Doctoral Thesis] Technische Universität Dresden, (2009) |
| Buchanan, Luke; Durand-Dubief, Mickaël; Roguev, Assen; Sakalar, Cagri; Wilhelm, Brian; Strålfors, Annelie; Shevchenko, Anna; Aasland, Rein; Shevchenko, Andrej; Ekwall, Karl; Stewart, A. Francis |
| The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains. |
| PLoS Genet., 5, no. 11, pp. 1000726-1000726, (2009) |
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| Guédard, Marina Le; Bessoule, Jean-Jacques; Boyer, Valérie; Ayciriex, Sophie; Velours, Gisèle; Kulik, Willem; Ejsing, Christer S.; Shevchenko, Andrej; Coulon, Denis; Lessire, René; Testet, Eric |
| PSI1 is responsible for the stearic acid enrichment that is characteristic of phosphatidylinositol in yeast. |
| FEBS J., 276, no. 21, pp. 6412-6424, (2009) |
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| Benndorf, Dirk; Vogt, Carsten; Jehmlich, Nico; Schmidt, Yvonne; Thomas, Henrik; Woffendin, Gary; Shevchenko, Andrej; Richnow, Hans-Hermann; Bergen, Martin von |
| Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments. |
| Biodegradation, 20, no. 6, pp. 737-750, (2009) |
| Download PDF |
| Maffini, Stefano; Maia, Ana R R; Manning, Amity L; Maliga, Zoltan; Pereira, Ana L; Junqueira, Magno; Shevchenko, Andrej; Hyman, Anthony A.; Yates, John R.; Galjart, Niels; Compton, Duane A; Maiato, Helder |
| Motor-independent targeting of CLASPs to kinetochores by CENP-E promotes microtubule turnover and poleward flux. |
| Curr. Biol., 19, no. 18, pp. 1566-1572, (2009) |
| Download PDF |
| Ståhlman, Marcus; Ejsing, Christer S.; Tarasov, Kirill V; Perman, Jeanna; Borén, Jan; Ekroos, Kim |
| High-throughput shotgun lipidomics by quadrupole time-of-flight mass spectrometry. |
| J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 877, no. 26, pp. 2664-2672, (2009) |
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| Kalvodova, Lucie; Sampaio, Julio; Cordo, Sandra; Ejsing, Christer S.; Shevchenko, Andrej; Simons, Kai |
| The lipidomes of vesicular stomatitis virus, semliki forest virus, and the host plasma membrane analyzed by quantitative shotgun mass spectrometry. |
| J. Virol., 83, no. 16, pp. 7996-8003, (2009) |
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| Valcu, Christina; Junqueira, Magno; Shevchenko, Andrej; Schlink, Katja |
| Comparative proteomic analysis of responses to pathogen infection and wounding in Fagus sylvatica. |
| J. Proteome Res., 8, no. 8, pp. 4077-4091, (2009) |
| Download PDF |
| Raa, Hilde; Grimmer, Stine; Schwudke, Dominik; Bergan, Jonas; Wälchli, Sébastien; Skotland, Tore; Shevchenko, Andrej; Sandvig, Kirsten |
| Glycosphingolipid requirements for endosome-to-golgi transport of shiga toxin. |
| Traffic, 10, no. 7, pp. 868-882, (2009) |
| Download PDF |
| Edelson-Averbukh, Marina; Shevchenko, Andrej; Pipkorn, Rüdiger; Lehmann, Wolf D |
| Gas-phase intramolecular phosphate shift in phosphotyrosine-containing peptide monoanions. |
| Anal. Chem., 81, no. 11, pp. 4369-4381, (2009) |
| Download PDF |
| Yoo, Hae Yong; Kumagai, Akiko; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| The Mre11-Rad50-Nbs1 complex mediates activation of TopBP1 by ATM. |
| Mol. Biol. Cell, 20, no. 9, pp. 2351-2360, (2009) |
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| Klemm, Robin W.; Ejsing, Christer S.; Surma, Michal; Kaiser, Hermann-Josef; Gerl, Mathias J.; Sampaio, Julio; Robillard, Quentin de; Ferguson, Charles; Proszynski, Tomasz J.; Shevchenko, Andrej; Simons, Kai |
| Segregation of sphingolipids and sterols during formation of secretory vesicles at the trans-Golgi network. |
| J. Cell Biol., 185, no. 4, pp. 601-612, (2009) |
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| Theis, Mirko; Slabicki, Mikolaj; Junqueira, Magno; Paszkowski-Rogacz, Maciej; Sontheimer, Jana; Kittler, Ralf; Heninger, Anne-Kristin; Glatter, Timo; Kruusmaa, Kristi; Poser, Ina; Hyman, Anthony A.; Pisabarro, Maria Teresa; Gstaiger, Matthias; Aebersold, Rudolf; Shevchenko, Andrej; Buchholz, Frank |
| Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division. |
| EMBO J., 28, no. 10, pp. 1453-1465, (2009) |
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| Ding, Li; Paszkowski-Rogacz, Maciej; Nitzsche, Anja; Slabicki, Mikolaj; Heninger, Anne-Kristin; Vries, Ingrid de; Kittler, Ralf; Junqueira, Magno; Shevchenko, Andrej; Schulz, Herbert; Hubner, Norbert; Doss, Michael Xavier; Sachinidis, Agapios; Hescheler, Juergen; Iacone, Roberto; Anastassiadis, Konstantinos; Stewart, A. Francis; Pisabarro, Maria Teresa; Caldarelli, Antonio; Poser, Ina; Theis, Mirko; Buchholz, Frank |
| A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity. |
| Cell Stem Cell, 4, no. 5, pp. 403-415, (2009) |
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| Saito, Kanako; Dubreuil, Veronique; Arai, Yoko; Wilsch-Bräuninger, Michaela; Schwudke, Dominik; Saher, Gesine; Miyata, Takaki; Breier, Georg; Thiele, Christoph; Shevchenko, Andrej; Nave, Klaus-Armin; Huttner, Wieland B. |
| Ablation of cholesterol biosynthesis in neural stem cells increases their VEGF expression and angiogenesis but causes neuron apoptosis. |
| Proc. Natl. Acad. Sci. U.S.A., 106, no. 20, pp. 8350-8355, (2009) |
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| Balbuena, Tiago S.; Silveira, Vanildo; Junqueira, Magno; Dias, Leonardo L C; Santa-Catarina, Claudete; Shevchenko, Andrej; Floh, Eny I S |
| Changes in the 2-DE protein profile during zygotic embryogenesis in the Brazilian Pine (Araucaria angustifolia). |
| J. Proteomics, 72, no. 3, pp. 337-352, (2009) |
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| Shevchenko, Andrej; Valcu, Christina; Junqueira, Magno |
| Tools for exploring the proteomosphere. |
| J. Proteomics, 72, no. 2, pp. 137-144, (2009) |
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| Zech, Tobias; Ejsing, Christer S.; Gaus, Katharina; Wet, Ben de; Shevchenko, Andrej; Simons, Kai; Harder, Thomas |
| Accumulation of raft lipids in T-cell plasma membrane domains engaged in TCR signalling. |
| EMBO J., 28, no. 5, pp. 466-476, (2009) |
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| Graessler, Juergen; Schwudke, Dominik; Schwarz, Peter E; Herzog, Ronny; Shevchenko, Andrej; Bornstein, Stefan R. |
| Top-down lipidomics reveals ether lipid deficiency in blood plasma of hypertensive patients. |
| PLoS ONE, 4, no. 7, pp. 6261-6261, (2009) |
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| Wielsch, Natalie |
| Optimized GeLC-MS/MS for bottom-up proteomics |
| [Doctoral Thesis] Technische Universität Dresden, (2009) |
| Ejsing, Christer S.; Sampaio, Julio; Surendranath, Vineeth; Duchoslav, Eva; Ekroos, Kim; Klemm, Robin W.; Simons, Kai; Shevchenko, Andrej |
| Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. |
| Proc. Natl. Acad. Sci. U.S.A., 106, no. 7, pp. 2136-2141, (2009) |
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| Bonzón-Kulichenko, Elena; Schwudke, Dominik; Gallardo, Nilda; Moltó, Eduardo; Fernández-Agulló, Teresa; Shevchenko, Andrej; Andrés, Antonio |
| Central leptin regulates total ceramide content and sterol regulatory element binding protein-1C proteolytic maturation in rat white adipose tissue. |
| Endocrinology, 150, no. 1, pp. 169-178, (2009) |
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| 2008 |
| Thomas, Henrik; Shevchenko, Andrej |
| Simplified validation of borderline hits of database searches. |
| Proteomics, 8, no. 20, pp. 4173-4177, (2008) |
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| Carvalho, Paulo C.; Junqueira, Magno; Valente, Richard H; Domont, Gilberto B |
| Caititu: a tool to graphically represent peptide sequence coverage and domain distribution. |
| J. Proteomics, 71, no. 4, pp. 486-489, (2008) |
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| Junqueira, Magno; Spirin, Victor; Balbuena, Tiago S.; Waridel, Patrice; Surendranath, Vineeth; Kryukov, Grigoriy; Adzhubei, Ivan; Thomas, Henrik; Sunyaev, Shamil; Shevchenko, Andrej |
| Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification. |
| J. Proteome Res., 7, no. 8, pp. 3382-3395, (2008) |
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| Junqueira, Magno; Spirin, Victor; Balbuena, Tiago S.; Thomas, Henrik; Adzhubei, Ivan; Sunyaev, Shamil; Shevchenko, Andrej |
| Protein identification pipeline for the homology-driven proteomics. |
| J. Proteomics, 71, no. 3, pp. 346-356, (2008) |
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| Entchev, Eugeni V.; Schwudke, Dominik; Zagoriy, Vyacheslav; Matyash, Vitali; Bogdanova, Aliona; Habermann, Bianca; Zhu, Lin; Shevchenko, Andrej; Kurzchalia, Teymuras V. |
| LET-767 is required for the production of branched chain and long chain fatty acids in Caenorhabditis elegans. |
| J. Biol. Chem., 283, no. 25, pp. 17550-17560, (2008) |
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| Matyash, Vitali; Liebisch, Gerhard; Kurzchalia, Teymuras V.; Shevchenko, Andrej; Schwudke, Dominik |
| Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics. |
| J. Lipid Res., 49, no. 5, pp. 1137-1146, (2008) |
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| Demmel, Lars; Beck, Mike; Klose, Christian; Schlaitz, Anne-Lore; Gloor, Yvonne; Hsu, Peggy P.; Havlis, Jan; Shevchenko, Andrej; Krause, Eberhard; Kalaidzidis, Yannis; Walch-Solimena, Christiane |
| Nucleocytoplasmic shuttling of the Golgi phosphatidylinositol 4-kinase Pik1 is regulated by 14-3-3 proteins and coordinates Golgi function with cell growth. |
| Mol. Biol. Cell, 19, no. 3, pp. 1046-1061, (2008) |
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| Shevchenko, Anna; Roguev, Assen; Schaft, Daniel; Buchanan, Luke; Habermann, Bianca; Sakalar, Cagri; Thomas, Henrik; Krogan, Nevan J; Shevchenko, Andrej; Stewart, A. Francis |
| Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. |
| Genome Biol., 9, no. 11, pp. 167-167, (2008) |
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| Schwudke, Dominik; Ergin, Asgar; Michael, Kathrin; Volkmar, Sven; Appel, Bernd; Knabner, Dorothea; Konietzny, Antje; Strauch, Eckhard |
| Broad-host-range Yersinia phage PY100: genome sequence, proteome analysis of virions, and DNA packaging strategy. |
| J. Bacteriol., 190, no. 1, pp. 332-342, (2008) |
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| 2007 |
| Tsai, Ching-Ju; Ejsing, Christer S.; Shevchenko, Andrej; Ziegler, Christine |
| The role of lipids and salts in two-dimensional crystallization of the glycine-betaine transporter BetP from Corynebacterium glutamicum. |
| J. Struct. Biol., 160, no. 3, pp. 275-286, (2007) |
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| Ozcan, Nuran; Ejsing, Christer S.; Shevchenko, Andrej; Lipski, Andrej; Morbach, Susanne; Krämer, Reinhard |
| Osmolality, temperature, and membrane lipid composition modulate the activity of betaine transporter BetP in Corynebacterium glutamicum. |
| J. Bacteriol., 189, no. 20, pp. 7485-7496, (2007) |
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| Katz, Adriana; Waridel, Patrice; Shevchenko, Andrej; Pick, Uri |
| Salt-induced changes in the plasma membrane proteome of the halotolerant alga Dunaliella salina as revealed by blue native gel electrophoresis and nano-LC-MS/MS analysis. |
| Mol. Cell Proteomics, 6, no. 9, pp. 1459-1472, (2007) |
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| Waridel, Patrice; Frank, Ari; Thomas, Henrik; Surendranath, Vineeth; Sunyaev, Shamil; Pevzner, Pavel; Shevchenko, Andrej |
| Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing. |
| Proteomics, 7, no. 14, pp. 2318-2329, (2007) |
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| Schwudke, Dominik; Hannich, J Thomas; Surendranath, Vineeth; Grimard, Vinciane; Moehring, Thomas; Burton, Lyle; Kurzchalia, Teymuras V.; Shevchenko, Andrej |
| Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra. |
| Anal. Chem., 79, no. 11, pp. 4083-4093, (2007) |
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| Yoo, Hae Yong; Kumagai, Akiko; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| Ataxia-telangiectasia mutated (ATM)-dependent activation of ATR occurs through phosphorylation of TopBP1 by ATM. |
| J. Biol. Chem., 282, no. 24, pp. 17501-17506, (2007) |
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| Strauch, Eckhard; Schwudke, Dominik; Linscheid, Michael |
| Predatory mechanisms of Bdellovibrio and like organisms. |
| Future microbiology, 2, pp. 63-73, (2007) |
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| Charneau, Sebastien; Junqueira, Magno; Costa, Camila M.; Pires, Daniele L.; Fernandes, Ellen S.; Bussacos, Ana C.; Sousa, Marcelo V. de; Ricart, Carlos A. O.; Shevchenko, Andrej; Teixeira, Antonio R. L. |
| The saliva proteome of the blood-feeding insect Triatoma infestans is rich in platelet-aggregation inhibitors |
| Int. J. Mass. Spectrom., 268, no. 2 - 3 , pp. 265-276, (2007) |
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| Schlaitz, Anne-Lore; Srayko, Martin; Dammermann, Alexander; Quintin, Sophie; Wielsch, Natalie; MacLeod, Ian; Robillard, Quentin de; Zinke, Andrea; Yates, John R.; Müller-Reichert, Thomas; Shevchenko, Andrej; Oegema, Karen; Hyman, Anthony A. |
| The C. elegans RSA complex localizes protein phosphatase 2A to centrosomes and regulates mitotic spindle assembly. |
| Cell, 128, no. 1, pp. 115-127, (2007) |
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| Schwudke, Dominik; Liebisch, Gerhard; Herzog, Ronny; Schmitz, Gerd; Shevchenko, Andrej |
| Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control |
| Spezialized analytical methods and lipids in disease, chapt. 10, pp. 175-191, in: Methods in enzymology ; 433, (2007) |
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| Gache, Vincent; Waridel, Patrice; Luche, Sylvie; Shevchenko, Andrej; Popov, Andrei V. |
| Purification and mass spectrometry identification of microtubule-binding proteins from Xenopus egg extracts |
| Microtubule Protocols, chapt. 3, pp. 29-43, in: Methods in molecular medicine, (2007) |
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| 2006 |
| Dehé, Pierre-Marie; Dichtl, Bernhard; Schaft, Daniel; Roguev, Assen; Pamblanco, Mercè; Lebrun, Régine; RodrÃguez-Gil, Alfonso; Mkandawire, Msau; Landsberg, Katharina; Shevchenko, Anna; Shevchenko, Andrej; Rosaleny, Lorena E; Tordera, Vicente; Chávez, Sebastián; Stewart, A. Francis; Géli, Vincent |
| Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation. |
| J. Biol. Chem., 281, no. 46, pp. 35404-35412, (2006) |
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| Wielsch, Natalie; Thomas, Henrik; Surendranath, Vineeth; Waridel, Patrice; Frank, Ari; Pevzner, Pavel; Shevchenko, Andrej |
| Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. |
| J. Proteome Res., 5, no. 9, pp. 2448-2456, (2006) |
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| Ejsing, Christer S.; Duchoslav, Eva; Sampaio, Julio; Simons, Kai; Bonner, Ron; Thiele, Christoph; Ekroos, Kim; Shevchenko, Andrej |
| Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. |
| Anal. Chem., 78, no. 17, pp. 6202-6214, (2006) |
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| Sebela, Marek; Stosová, Tat'ána; Havlis, Jan; Wielsch, Natalie; Thomas, Henrik; Zdráhal, Zbynek; Shevchenko, Andrej |
| Thermostable trypsin conjugates for high-throughput proteomics: synthesis and performance evaluation. |
| Proteomics, 6, no. 10, pp. 2959-2963, (2006) |
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| Link, Vinzenz; Carvalho, Lara; Castanon, Irinka; Stockinger, Petra; Shevchenko, Andrej; Heisenberg, Carl-Philipp |
| Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. |
| J. Cell. Sci., 119, no. Pt 10, pp. 2073-2083, (2006) |
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| Ejsing, Christer S.; Moehring, Thomas; Bahr, Ute; Duchoslav, Eva; Karas, Michael; Simons, Kai; Shevchenko, Andrej |
| Collision-induced dissociation pathways of yeast sphingolipids and their molecular profiling in total lipid extracts: a study by quadrupole TOF and linear ion trap-orbitrap mass spectrometry. |
| Journal of mass spectrometry : JMS, 41, no. 3, pp. 372-389, (2006) |
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| Link, Vinzenz; Shevchenko, Andrej; Heisenberg, Carl-Philipp |
| Proteomics of early zebrafish embryos. |
| BMC Dev. Biol., 6, pp. 1-1, (2006) |
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| Guércio, Rafael A P; Shevchenko, Anna; Shevchenko, Andrej; López-Lozano, Jorge L; Paba, Jaime; Sousa, Marcelo V. de; Ricart, Carlos A. O. |
| Ontogenetic variations in the venom proteome of the Amazonian snake Bothrops atrox. |
| Proteome science, 4, pp. 11-11, (2006) |
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| Schwudke, Dominik; Oegema, Jeffrey; Burton, Lyle; Entchev, Eugeni V.; Hannich, J Thomas; Ejsing, Christer S.; Kurzchalia, Teymuras V.; Shevchenko, Andrej |
| Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition. |
| Anal. Chem., 78, no. 2, pp. 585-595, (2006) |
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| Shevchenko, Andrej; Tomas, Henrik; Havlis, Jan; Olsen, Jesper V; Mann, Matthias |
| In-gel digestion for mass spectrometric characterization of proteins and proteomes. |
| Nat Protoc, 1, no. 6, pp. 2856-2860, (2006) |
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| Liska, Adam J.; Shevchenko, Andrej |
| Identification of proteins from organisms with unsequenced genomes by tandem mass spectrometry and sequence-similarity database searching tools |
| Cell biology : a laboratory handbook, chapt. 51, pp. 399-407, in: Part 4, (2006) |
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| Füllekrug, Joachim; Shevchenko, Anna; Shevchenko, Andrej; Simons, Kai |
| Identification of glycosylated marker proteins of epithelial polarity in MDCK cells by homology driven proteomics. |
| BMC Biochem., 7, pp. 8-8, (2006) |
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| 2005 |
| Lee, Joon; Gold, Daniel A; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| Roles of replication fork-interacting and Chk1-activating domains from Claspin in a DNA replication checkpoint response. |
| Mol. Biol. Cell, 16, no. 11, pp. 5269-5282, (2005) |
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| Liska, Adam J.; Sunyaev, Shamil; Shilov, Ignat N; Schaeffer, Dan A; Shevchenko, Andrej |
| Error-tolerant EST database searches by tandem mass spectrometry and multiTag software. |
| Proteomics, 5, no. 16, pp. 4118-4122, (2005) |
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| Liu, Yanmei; Shevchenko, Anna; Shevchenko, Andrej; Berk, Arnold J |
| Adenovirus exploits the cellular aggresome response to accelerate inactivation of the MRN complex. |
| J. Virol., 79, no. 22, pp. 14004-14016, (2005) |
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| Nedelcheva, Marina N; Roguev, Assen; Dolapchiev, Luben B; Shevchenko, Andrej; Taskov, Hristo B; Shevchenko, Anna; Stewart, A. Francis; Stoynov, Stoyno |
| Uncoupling of unwinding from DNA synthesis implies regulation of MCM helicase by Tof1/Mrc1/Csm3 checkpoint complex. |
| J. Mol. Biol., 347, no. 3, pp. 509-521, (2005) |
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| Oelschlaegel, Tobias; Schwickart, Martin; Matos, Joao; Bogdanova, Aliona; Camasses, Alain; Havlis, Jan; Shevchenko, Andrej; Zachariae, Wolfgang |
| The yeast APC/C subunit Mnd2 prevents premature sister chromatid separation triggered by the meiosis-specific APC/C-Ama1. |
| Cell, 120, no. 6, pp. 773-788, (2005) |
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| Sebela, Marek; Kopecný, David; Lamplot, Zbynek; Havlis, Jan; Thomas, Henrik; Shevchenko, Andrej |
| Thermostable beta-cyclodextrin conjugates of two similar plant amine oxidases and their properties. |
| Biotechnol. Appl. Biochem., 41, no. Pt 1, pp. 77-84, (2005) |
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| Shevchenko, Anna; Sousa, Mirta M. L. de; Waridel, Patrice; Bittencourt, Silvia Tolfo; Sousa, Marcelo V. de; Shevchenko, Andrej |
| Sequence similarity-based proteomics in insects: characterization of the larvae venom of the Brazilian moth Cerodirphia speciosa. |
| J. Proteome Res., 4, no. 3, pp. 862-869, (2005) |
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| Kuerschner, Lars; Ejsing, Christer S.; Ekroos, Kim; Shevchenko, Andrej; Anderson, Kurt I.; Thiele, Christoph |
| Polyene-lipids: a new tool to image lipids. |
| Nat. Methods, 2, no. 1, pp. 39-45, (2005) |
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| 2004 |
| Yoo, Hae Yong; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| Mcm2 is a direct substrate of ATM and ATR during DNA damage and DNA replication checkpoint responses. |
| J. Biol. Chem., 279, no. 51, pp. 53353-53364, (2004) |
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| Liska, Adam J.; Popov, Andrei V.; Sunyaev, Shamil; Coughlin, Peg; Habermann, Bianca; Shevchenko, Anna; Bork, Peer; Karsenti, Eric; Shevchenko, Andrej |
| Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome. |
| Proteomics, 4, no. 9, pp. 2707-2721, (2004) |
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| Liska, Adam J.; Shevchenko, Andrej; Pick, Uri; Katz, Adriana |
| Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics. |
| Plant Physiol., 136, no. 1, pp. 2806-2817, (2004) |
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| Liska, Adam J. |
| The morality of problem selection in proteomics. |
| Proteomics, 4, no. 7, pp. 1929-1931, (2004) |
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| Sigala, Jeanette L Ducut; Bottero, Virginie; Young, David B; Shevchenko, Andrej; Mercurio, Frank; Verma, Inder M |
| Activation of transcription factor NF-kappaB requires ELKS, an IkappaB kinase regulatory subunit. |
| Science, 304, no. 5679, pp. 1963-1967, (2004) |
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| Havlis, Jan; Shevchenko, Andrej |
| Absolute quantification of proteins in solutions and in polyacrylamide gels by mass spectrometry. |
| Anal. Chem., 76, no. 11, pp. 3029-3036, (2004) |
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| Yano, Tamaki; Quinto, Sonia López de; Matsui, Yasuhisa; Shevchenko, Anna; Shevchenko, Andrej; Ephrussi, Anne |
| Hrp48, a Drosophila hnRNPA/B homolog, binds and regulates translation of oskar mRNA. |
| Dev. Cell, 6, no. 5, pp. 637-648, (2004) |
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| Yoo, Hae Yong; Kumagai, Akiko; Shevchenko, Anna; Shevchenko, Andrej; Dunphy, William G |
| Adaptation of a DNA replication checkpoint response depends upon inactivation of Claspin by the Polo-like kinase. |
| Cell, 117, no. 5, pp. 575-588, (2004) |
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| Schwickart, Martin; Havlis, Jan; Habermann, Bianca; Bogdanova, Aliona; Camasses, Alain; Oelschlaegel, Tobias; Shevchenko, Andrej; Zachariae, Wolfgang |
| Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27. |
| Mol. Cell. Biol., 24, no. 8, pp. 3562-3576, (2004) |
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| Habermann, Bianca; Oegema, Jeffrey; Sunyaev, Shamil; Shevchenko, Andrej |
| The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches. |
| Mol. Cell Proteomics, 3, no. 3, pp. 238-249, (2004) |
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| Roguev, Assen; Shevchenko, Anna; Schaft, Daniel; Thomas, Henrik; Stewart, A. Francis; Shevchenko, Andrej |
| A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. |
| Mol. Cell Proteomics, 3, no. 2, pp. 125-132, (2004) |
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| Thomas, Henrik; Havlis, Jan; Peychl, Jan; Shevchenko, Andrej |
| Dried-droplet probe preparation on AnchorChip targets for navigating the acquisition of matrix-assisted laser desorption/ionization time-of-flight spectra by fluorescence of matrix/analyte crystals. |
| Rapid Commun. Mass Spectrom., 18, no. 9, pp. 923-930, (2004) |
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| 2003 |
| Ekroos, Kim; Ejsing, Christer S.; Bahr, Ute; Karas, Michael; Simons, Kai; Shevchenko, Andrej |
| Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation. |
| J. Lipid Res., 44, no. 11, pp. 2181-2192, (2003) |
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| Ledesma, Maria Dolores; Silva, Jorge Santos Da; Schevchenko, Anna; Wilm, Matthias; Dotti, Carlos G |
| Proteomic characterisation of neuronal sphingolipid-cholesterol microdomains: role in plasminogen activation. |
| Brain Res., 987, no. 1, pp. 107-116, (2003) |
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| Desai, Arshad; Rybina, Sonja; Müller-Reichert, Thomas; Shevchenko, Andrej; Shevchenko, Anna; Hyman, Anthony A.; Oegema, Karen |
| KNL-1 directs assembly of the microtubule-binding interface of the kinetochore in C. elegans. |
| Genes Dev., 17, no. 19, pp. 2421-2435, (2003) |
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| Camasses, Alain; Bogdanova, Aliona; Shevchenko, Andrej; Zachariae, Wolfgang |
| The CCT chaperonin promotes activation of the anaphase-promoting complex through the generation of functional Cdc20. |
| Mol. Cell, 12, no. 1, pp. 87-100, (2003) |
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| Schaft, Daniel; Roguev, Assen; Kotovic, Kimberly M.; Shevchenko, Anna; Sarov, Mihail; Shevchenko, Andrej; Neugebauer, Karla M.; Stewart, A. Francis |
| The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation. |
| Nucleic Acids Res., 31, no. 10, pp. 2475-2482, (2003) |
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| Schuck, Sebastian; Honsho, Masanori; Ekroos, Kim; Shevchenko, Andrej; Simons, Kai |
| Resistance of cell membranes to different detergents. |
| Proc. Natl. Acad. Sci. U.S.A., 100, no. 10, pp. 5795-5800, (2003) |
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| Sunyaev, Shamil; Liska, Adam J.; Golod, Alexander; Shevchenko, Anna; Shevchenko, Andrej |
| MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry. |
| Anal. Chem., 75, no. 6, pp. 1307-1315, (2003) |
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| Roguev, Assen; Schaft, Daniel; Shevchenko, Anna; Aasland, Rein; Shevchenko, Andrej; Stewart, A. Francis |
| High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. |
| J. Biol. Chem., 278, no. 10, pp. 8487-8493, (2003) |
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| Havlis, Jan; Thomas, Henrik; Sebela, Marek; Shevchenko, Andrej |
| Fast-response proteomics by accelerated in-gel digestion of proteins. |
| Anal. Chem., 75, no. 6, pp. 1300-1306, (2003) |
| Download PDF |
| Shevchenko, Anna; Sunyaev, Shamil; Liska, Adam J.; Bork, Peer; Shevchenko, Andrej |
| Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes. |
| Methods Mol. Biol., 211, pp. 221-234, (2003) |
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| Liska, Adam J.; Shevchenko, Andrej |
| Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications. |
| Proteomics, 3, no. 1, pp. 19-28, (2003) |
| Download PDF |
| Liska, Adam J.; Shevchenko, Andrej |
| Combining mass spectrometry with database interrogation strategies in proteomics |
| Trends in analytical chemistry, 22, no. 5, pp. 291-298, (2003) |
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| 2002 |
| Soulard, Alexandre; Lechler, Terry; Spiridonov, Vladislav; Shevchenko, Andrej; Shevchenko, Anna; Li, Rong; Winsor, Barbara |
| Saccharomyces cerevisiae Bzz1p is implicated with type I myosins in actin patch polarization and is able to recruit actin-polymerizing machinery in vitro. |
| Mol. Cell. Biol., 22, no. 22, pp. 7889-7906, (2002) |
| Download PDF |
| Harada, Josephine N; Shevchenko, Anna; Shevchenko, Andrej; Pallas, David C.; Berk, Arnold J |
| Analysis of the adenovirus E1B-55K-anchored proteome reveals its link to ubiquitination machinery. |
| J. Virol., 76, no. 18, pp. 9194-9206, (2002) |
| Download PDF |
| Stevens, Jennitte L; Cantin, Greg T; Wang, Gang; Shevchenko, Andrej; Shevchenko, Anna; Berk, Arnold J |
| Transcription control by E1A and MAP kinase pathway via Sur2 mediator subunit. |
| Science, 296, no. 5568, pp. 755-758, (2002) |
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| Ekroos, Kim; Chernushevich, Igor V.; Simons, Kai; Shevchenko, Andrej |
| Quantitative profiling of phospholipids by multiple precursor ion scanning on a hybrid quadrupole time-of-flight mass spectrometer. |
| Anal. Chem., 74, no. 5, pp. 941-949, (2002) |
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| Shevchenko, Anna; Schaft, Daniel; Roguev, Assen; Pijnappel, W W M Pim; Stewart, A. Francis; Shevchenko, Andrej |
| Deciphering protein complexes and protein interaction networks by tandem affinity purification and mass spectrometry: analytical perspective. |
| Mol. Cell Proteomics, 1, no. 3, pp. 204-212, (2002) |
| Download PDF |
| Ekroos, Kim; Shevchenko, Andrej |
| Simple two-point calibration of hybrid quadrupole time-of-flight instruments using a synthetic lipid standard. |
| Rapid Commun. Mass Spectrom., 16, no. 12, pp. 1254-1255, (2002) |
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| Shevchenko, Andrej; Chernushevich, Igor V.; Shevchenko, Anna; Wilm, Matthias; Mann, Matthias |
| "De novo" sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry. |
| Mol. Biotechnol., 20, no. 1, pp. 107-118, (2002) |
| Download PDFDownload Supplementary Text FileDownload Supplementary Text FileDownload Supplementary Image File |
| Deshaies, Raymond J.; Seol, Jae Hong; McDonald, W Hayes; Cope, Gregory; Lyapina, Svetlana; Shevchenko, Andrej; Shevchenko, Anna; Verma, Rati; Yates, John R. |
| Charting the protein complexome in yeast by mass spectrometry. |
| Mol. Cell Proteomics, 1, no. 1, pp. 3-10, (2002) |
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| 2001 |
| Moreno-Borchart, Alexandra C.; Strasser, Katrin; Finkbeiner, Martin G.; Shevchenko, Anna; Shevchenko, Andrej; Knop, Michael |
| Prospore membrane formation linked to the leading edge protein (LEP) coat assembly. |
| EMBO J., 20, no. 24, pp. 6946-6957, (2001) |
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| Shevchenko, Anna; Shevchenko, Andrej |
| Evaluation of the efficiency of in-gel digestion of proteins by peptide isotopic labeling and MALDI mass spectrometry. |
| Anal. Biochem., 296, no. 2, pp. 279-283, (2001) |
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| Cope, Gregory; Lyapina, Svetlana; Shevchenko, Anna; Serino, Giovanna; Tsuge, Tomohiko; Zhou, Chunshui; Wolf, Dieter A.; Wei, Ning; Shevchenko, Andrej; Deshaies, Raymond J. |
| Promotion of NEDD-CUL1 conjugate cleavage by COP9 signalosome. |
| Science, 292, no. 5520, pp. 1382-1385, (2001) |
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| Shevchenko, Andrej; Sunyaev, Shamil; Loboda, Alexander; Shevchenko, Anna; Bork, Peer; Ens, Werner; Standing, Kenneth G. |
| Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching. |
| Anal. Chem., 73, no. 9, pp. 1917-1926, (2001) |
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| Seol, Jae Hong; Shevchenko, Anna; Shevchenko, Andrej; Deshaies, Raymond J. |
| Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly. |
| Nat. Cell Biol., 3, no. 4, pp. 384-391, (2001) |
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| Stuckmann, Ingo; Weigmann, Anja; Shevchenko, Andrej; Mann, Matthias; Huttner, Wieland B. |
| Ephrin B1 is expressed on neuroepithelial cells in correlation with neocortical neurogenesis. |
| J. Neurosci., 21, no. 8, pp. 2726-2737, (2001) |
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| Shevchenko, Anna; Loboda, Alexander; Ens, Werner; Schraven, Burkhart; Standing, Kenneth G.; Shevchenko, Andrej |
| Archived polyacrylamide gels as a resource for proteome characterization by mass spectrometry. |
| Electrophoresis, 22, no. 6, pp. 1194-1203, (2001) |
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| Janke, Carsten; Ortiz, Jennifer; Lechner, Johannes; Shevchenko, Anna; Shevchenko, Andrej; Magiera, Maria M.; Schramm, C; Schiebel, E |
| The budding yeast proteins Spc24p and Spc25p interact with Ndc80p and Nuf2p at the kinetochore and are important for kinetochore clustering and checkpoint control. |
| EMBO J., 20, no. 4, pp. 777-791, (2001) |
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