Featured movie

3d rendering of Drosophila embryo stained with nuclear marker and anti-GFP antibody revealing the expression of FlyFos-CG4702-GFP gene expression reporter. The embryo was imaged with SPIM from 8 angles and reconstructed with bead-based registration framework followed by content-based image fusion. 3d rendering was done Daniel James White using BioImageXD.

Additional videos and images

	Csp_OpenSPIM.mov Csp-sGFP imaged in OpenSPIM	4.3 M
	Drosophila_Embryogenesis_beads_removed.mov 3d rendering of Drosophila embryogenesis time-lapse reconstructed from 5 angles SPIM recording. All cells are marked with His-YFP.	5.0 M
	Drosophila_Gastrulation.mov 3d rendering of Drosophila gastrulation time-lapse reconstructed from 5 angles SPIM recording. All cells are marked with His-YFP.	393 K
	Global_Opt.mov Progress of global optimization during bead-based registration of 8-view SPIM acquisition of C. elegans larva.	3.9 M
	Global_Opt_with_Tiling.mov Progress of global optimization during bead-based registration of 18-view tiled acquisition of Drosophila blastoderm stage embryo using a spinning disc confocal.	6.3 M
	EM_registration_6x6.avi Visualization of registration of 6x6 EM tile system using global optimization of SIFT feature displacement. Green dots are corresponding SIFT features and red lines show the residual error at a given iteration of the optimizer.	15.4 M
	EM_registration_3x4x4.avi Visualization of registration of 3 serial TEM sections consisting of 4x4 image tiles using global optimization of SIFT feature displacement. Green dots are corresponding SIFT features and red lines show the residual error at a given iteration of the optimizer.	9.3 M
	Warhol.jpg Andy Warhol inspired poster for the FlyFos system - designed by Pavel made by Radek	1.0 M
	mosaic4.jpg a pattern of gene expression as a mosaic from images of embryo gene expression patterns I	638 K
	mosaic5.jpg a pattern of gene expression as a mosaic from images of embryo gene expression patterns II	357 K